daboross/gist:5058806

## gistfile1.txt
CoreProtect started updating yesterday, and my server crashed when it was around 40% done...
2013-02-27 17:46:48 [INFO] [CoreProtect] Upgrading... 40% complete.
then,

it crashes around 10 minutes later:
2013-02-27 17:55:41 [SEVERE] The server has stopped responding!
2013-02-27 17:55:42 [SEVERE] Please report this to md_5!
2013-02-27 17:55:42 [SEVERE] Spigot version: 1.4.7-R1.1-SNAPSHOT
2013-02-27 17:55:42 [SEVERE] Begin Exception Trace For All Threads:
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-16
2013-02-27 17:55:45 [SEVERE]     PID: 43 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.coreprotect.thread.CacheCleanUp.run(CacheCleanUp.java:14)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-8
2013-02-27 17:55:45 [SEVERE]     PID: 23 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         com.griefcraft.modules.credits.CreditsModule$CreditsTask.run(CreditsModule.java:110)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: process reaper
2013-02-27 17:55:45 [SEVERE]     PID: 5881 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         sun.misc.Unsafe.park(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.locks.LockSupport.parkNanos(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.SynchronousQueue$TransferStack.transfer(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.SynchronousQueue.poll(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.ThreadPoolExecutor.getTask(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Spigot Watchdog Thread
2013-02-27 17:55:45 [SEVERE]     PID: 18 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.dumpThreads(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.getAllStackTraces(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.util.WatchdogThread.run(WatchdogThread.java:60)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Timer-1
2013-02-27 17:55:45 [SEVERE]     PID: 50 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Object.wait(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.util.TimerThread.mainLoop(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.TimerThread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Server thread
2013-02-27 17:55:45 [SEVERE]     PID: 13 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.io.FileInputStream.read(Native Method)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.EssentialsConf.load(EssentialsConf.java:57)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Warps.reloadConfig(Warps.java:113)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Essentials$EssentialsWorldListener.onWorldLoad(Essentials.java:702)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.lang.reflect.Method.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.java.JavaPluginLoader$1.execute(JavaPluginLoader.java:425)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:479)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:464)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.CraftServer.createWorld(CraftServer.java:783)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.Bukkit.createWorld(Bukkit.java:156)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.WorldCreator.createWorld(WorldCreator.java:235)
2013-02-27 17:55:45 [SEVERE]         com.onarandombox.MultiverseCore.utils.WorldManager.doLoad(WorldManager.java:395)
2013-02-27 17:55:45 [SEVERE]         com.onarandombox.MultiverseCore.utils.WorldManager.doLoad(WorldManager.java:376)
2013-02-27 17:55:45 [SEVERE]         com.onarandombox.MultiverseCore.utils.WorldManager.doLoad(WorldManager.java:359)
2013-02-27 17:55:45 [SEVERE]         com.onarandombox.MultiverseCore.utils.WorldManager.loadWorld(WorldManager.java:346)
2013-02-27 17:55:45 [SEVERE]         com.onarandombox.MultiverseCore.commands.LoadCommand.runCommand(LoadCommand.java:36)
2013-02-27 17:55:45 [SEVERE]         com.pneumaticraft.commandhandler.multiverse.CommandHandler.checkAndRunCommand(CommandHandler.java:279)
2013-02-27 17:55:45 [SEVERE]         com.pneumaticraft.commandhandler.multiverse.CommandHandler.processFoundCommands(CommandHandler.java:143)
2013-02-27 17:55:45 [SEVERE]         com.pneumaticraft.commandhandler.multiverse.CommandHandler.locateAndRunCommand(CommandHandler.java:93)
2013-02-27 17:55:45 [SEVERE]         com.onarandombox.MultiverseCore.MultiverseCore.onCommand(MultiverseCore.java:882)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.command.PluginCommand.execute(PluginCommand.java:44)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.command.SimpleCommandMap.dispatch(SimpleCommandMap.java:186)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.CraftServer.dispatchCommand(CraftServer.java:540)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.CraftServer.dispatchServerCommand(CraftServer.java:532)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.DedicatedServer.al(DedicatedServer.java:260)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.DedicatedServer.r(DedicatedServer.java:225)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.MinecraftServer.q(MinecraftServer.java:485)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.MinecraftServer.run(MinecraftServer.java:420)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.ThreadServerApplication.run(SourceFile:849)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: File IO Thread
2013-02-27 17:55:45 [SEVERE]     PID: 31 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.FileIOThread.b(SourceFile:43)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.FileIOThread.run(SourceFile:22)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-7
2013-02-27 17:55:45 [SEVERE]     PID: 22 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         com.griefcraft.util.DatabaseThread.run(DatabaseThread.java:161)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-4
2013-02-27 17:55:45 [SEVERE]     PID: 14 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.ThreadSleepForever.run(SourceFile:52)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1373 read thread
2013-02-27 17:55:45 [SEVERE]     PID: 5961 | Alive: false | State: TERMINATED
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.socketRead0(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.io.FilterInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.Packet.a(Packet.java:93)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:190)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: DestroyJavaVM
2013-02-27 17:55:45 [SEVERE]     PID: 15 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1342 write thread
2013-02-27 17:55:45 [SEVERE]     PID: 5862 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Listen thread
2013-02-27 17:55:45 [SEVERE]     PID: 17 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.net.PlainSocketImpl.socketAccept(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.net.AbstractPlainSocketImpl.accept(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.ServerSocket.implAccept(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.ServerSocket.accept(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.DedicatedServerConnectionThread.run(DedicatedServerConnectionThread.java:62)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-22
2013-02-27 17:55:45 [SEVERE]     PID: 57 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.net.PlainDatagramSocketImpl.receive0(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.net.AbstractPlainDatagramSocketImpl.receive(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.DatagramSocket.receive(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.RemoteStatusListener.run(SourceFile:260)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-5
2013-02-27 17:55:45 [SEVERE]     PID: 16 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.io.FileInputStream.readBytes(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.io.FileInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.io.BufferedInputStream.fill(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.io.BufferedInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.io.FilterInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.libs.jline.console.ConsoleReader$1.read(ConsoleReader.java:167)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.libs.jline.internal.InputStreamReader.read(InputStreamReader.java:267)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.libs.jline.internal.InputStreamReader.read(InputStreamReader.java:204)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readCharacter(ConsoleReader.java:995)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readLine(ConsoleReader.java:1167)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.ThreadCommandReader.run(ThreadCommandReader.java:31)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1313 write thread
2013-02-27 17:55:45 [SEVERE]     PID: 5733 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1346 read thread
2013-02-27 17:55:45 [SEVERE]     PID: 5877 | Alive: true | State: BLOCKED
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.getPlugin(SimplePluginManager.java:339)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getPlugin(PermissionsEx.java:141)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.isAvailable(PermissionsEx.java:145)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getPermissionManager(PermissionsEx.java:151)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getUser(PermissionsEx.java:159)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.superperms.PermissiblePEX.isPermissionSet(PermissiblePEX.java:216)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.entity.CraftHumanEntity.isPermissionSet(CraftHumanEntity.java:101)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.SuperpermsHandler.hasPermission(SuperpermsHandler.java:40)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.PermissionsExHandler.hasPermission(PermissionsExHandler.java:69)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.PermissionsHandler.hasPermission(PermissionsHandler.java:75)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.User.isAuthorizedCheck(User.java:87)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.User.isAuthorized(User.java:69)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Util.formatString(Util.java:654)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Util.formatMessage(Util.java:688)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.chat.EssentialsChatPlayerListenerLowest.onPlayerChat(EssentialsChatPlayerListenerLowest.java:47)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.GeneratedMethodAccessor113.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.lang.reflect.Method.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.java.JavaPluginLoader$1.execute(JavaPluginLoader.java:425)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:479)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:461)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.PlayerConnection.chat(PlayerConnection.java:916)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.PlayerConnection.a(PlayerConnection.java:855)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.Packet3Chat.handle(Packet3Chat.java:44)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:208)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1373 write thread
2013-02-27 17:55:45 [SEVERE]     PID: 5962 | Alive: false | State: TERMINATED
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1369 read thread
2013-02-27 17:55:45 [SEVERE]     PID: 5950 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.socketRead0(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.io.FilterInputStream.read(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.Packet.a(Packet.java:93)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:190)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-2646
2013-02-27 17:55:45 [SEVERE]     PID: 5963 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkMasterThread.run(SourceFile:297)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1369 write thread
2013-02-27 17:55:45 [SEVERE]     PID: 5951 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1313 read thread
2013-02-27 17:55:45 [SEVERE]     PID: 5732 | Alive: true | State: BLOCKED
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.getPlugin(SimplePluginManager.java:339)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getPlugin(PermissionsEx.java:141)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.isAvailable(PermissionsEx.java:145)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getPermissionManager(PermissionsEx.java:151)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getUser(PermissionsEx.java:159)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.superperms.PermissiblePEX.isPermissionSet(PermissiblePEX.java:216)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.entity.CraftHumanEntity.isPermissionSet(CraftHumanEntity.java:101)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.SuperpermsHandler.hasPermission(SuperpermsHandler.java:40)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.PermissionsExHandler.hasPermission(PermissionsExHandler.java:69)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.PermissionsHandler.hasPermission(PermissionsHandler.java:75)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.User.isAuthorizedCheck(User.java:87)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.User.isAuthorized(User.java:69)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Util.formatString(Util.java:654)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Util.formatMessage(Util.java:688)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.chat.EssentialsChatPlayerListenerLowest.onPlayerChat(EssentialsChatPlayerListenerLowest.java:47)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.GeneratedMethodAccessor113.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.lang.reflect.Method.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.java.JavaPluginLoader$1.execute(JavaPluginLoader.java:425)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:479)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:461)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.PlayerConnection.chat(PlayerConnection.java:916)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.PlayerConnection.a(PlayerConnection.java:855)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.Packet3Chat.handle(Packet3Chat.java:44)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:208)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1346 write thread
2013-02-27 17:55:45 [SEVERE]     PID: 5878 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Snooper Timer
2013-02-27 17:55:45 [SEVERE]     PID: 9 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Object.wait(Native Method)
2013-02-27 17:55:45 [SEVERE]         java.util.TimerThread.mainLoop(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.util.TimerThread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Spigot Metrics Gathering Thread
2013-02-27 17:55:45 [SEVERE]     PID: 19 | Alive: true | State: TIMED_WAITING
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.util.TimedThread.run(TimedThread.java:29)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Thread-15
2013-02-27 17:55:45 [SEVERE]     PID: 42 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         org.sqlite.NativeDB.step(Native Method)
2013-02-27 17:55:45 [SEVERE]         org.sqlite.DB.execute(DB.java:328)
2013-02-27 17:55:45 [SEVERE]         org.sqlite.DB.executeUpdate(DB.java:363)
2013-02-27 17:55:45 [SEVERE]         org.sqlite.PrepStmt.executeUpdate(PrepStmt.java:85)
2013-02-27 17:55:45 [SEVERE]         net.coreprotect.database.Database.insertBlock(Database.java:269)
2013-02-27 17:55:45 [SEVERE]         net.coreprotect.convert.Converter.stage2(Converter.java:705)
2013-02-27 17:55:45 [SEVERE]         net.coreprotect.convert.Converter.access$0(Converter.java:155)
2013-02-27 17:55:45 [SEVERE]         net.coreprotect.convert.Converter$1stage2.run(Converter.java:913)
2013-02-27 17:55:45 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Signal Dispatcher
2013-02-27 17:55:45 [SEVERE]     PID: 4 | Alive: true | State: RUNNABLE
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE] ------------------------------
2013-02-27 17:55:45 [SEVERE] Current Thread: Connection #1342 read thread
2013-02-27 17:55:45 [SEVERE]     PID: 5861 | Alive: true | State: BLOCKED
2013-02-27 17:55:45 [SEVERE]     Stack:
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.getPlugin(SimplePluginManager.java:339)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getPlugin(PermissionsEx.java:141)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.isAvailable(PermissionsEx.java:145)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getPermissionManager(PermissionsEx.java:151)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.PermissionsEx.getUser(PermissionsEx.java:159)
2013-02-27 17:55:45 [SEVERE]         ru.tehkode.permissions.bukkit.superperms.PermissiblePEX.isPermissionSet(PermissiblePEX.java:216)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.entity.CraftHumanEntity.isPermissionSet(CraftHumanEntity.java:101)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.SuperpermsHandler.hasPermission(SuperpermsHandler.java:40)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.PermissionsExHandler.hasPermission(PermissionsExHandler.java:69)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.perm.PermissionsHandler.hasPermission(PermissionsHandler.java:75)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.User.isAuthorizedCheck(User.java:87)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.User.isAuthorized(User.java:69)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Util.formatString(Util.java:654)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.Util.formatMessage(Util.java:688)
2013-02-27 17:55:45 [SEVERE]         com.earth2me.essentials.chat.EssentialsChatPlayerListenerLowest.onPlayerChat(EssentialsChatPlayerListenerLowest.java:47)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.GeneratedMethodAccessor113.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         java.lang.reflect.Method.invoke(Unknown Source)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.java.JavaPluginLoader$1.execute(JavaPluginLoader.java:425)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:479)
2013-02-27 17:55:45 [SEVERE]         org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:461)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.PlayerConnection.chat(PlayerConnection.java:916)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.PlayerConnection.a(PlayerConnection.java:855)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.Packet3Chat.handle(Packet3Chat.java:44)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:208)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:55:45 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:55:45 [SEVERE] ------------------------------

I think that essentials caused that, but I wasn't doing anything special... (loading up the server or reloading essentials).

When I stop the server after this error, I get:

2013-02-27 17:56:40 [INFO] [CommandHelper] Disabling CommandHelper v1287-9ce5f23
2013-02-27 17:56:40 [INFO] [CoreProtect] Disabling CoreProtect v2.0
2013-02-27 17:56:41 [INFO] [CoreProtect] Finishing up data conversion. Please wait...
2013-02-27 17:57:09 [INFO] Read timed out
2013-02-27 17:57:18 [INFO] Read timed out
2013-02-27 17:57:27 [INFO] Read timed out

but when I restart the server:

2013-02-27 17:58:46 [INFO] [CoreProtect] Enabling CoreProtect v2.0
2013-02-27 17:58:46 [INFO] Accepted EditSessionFactory of type net.coreprotect.worldedit.CoreProtectEditSessionFactory from net.coreprotect.worldedit
2013-02-27 17:58:46 [INFO] --------------------
2013-02-27 17:58:46 [INFO] [CoreProtect] Upgrade starting. This may take some time.
2013-02-27 17:58:46 [INFO] [CoreProtect] Do not restart your server until completed.
2013-02-27 17:58:46 [INFO] --------------------
2013-02-27 17:59:06 [INFO] CoreProtect version 2.0 is enabled!
2013-02-27 17:59:06 [INFO] [CoreProtect] Using SQLite for data storage.

It starts upgrading again....


I get another crash:
2013-02-27 17:59:17 [INFO] [Essentials] Enabling Essentials v2.10.1
2013-02-27 17:59:17 [INFO] Bukkit version format changed. Version not checked.
2013-02-27 17:59:17 [INFO] git-Spigot-484 (MC: 1.4.7)
2013-02-27 17:59:17 [INFO] 1.4.7-R1.1-SNAPSHOT
2013-02-27 17:59:18 [INFO] CButD: Version can't check use check-File
2013-02-27 17:59:18 [INFO] CButD: CraftBukkit is up to Date
2013-02-27 17:59:27 [INFO] Read timed out
2013-02-27 17:59:46 [INFO] The update-Check only work every 24 hours, the last check was 6 hours ago.
2013-02-27 17:59:48 [SEVERE] The server has stopped responding!
2013-02-27 17:59:48 [SEVERE] Please report this to md_5!
2013-02-27 17:59:48 [SEVERE] Spigot version: 1.4.7-R1.1-SNAPSHOT
2013-02-27 17:59:48 [SEVERE] Begin Exception Trace For All Threads:
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Thread-4
2013-02-27 17:59:48 [SEVERE]     PID: 14 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.ThreadSleepForever.run(SourceFile:52)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Listen thread
2013-02-27 17:59:48 [SEVERE]     PID: 17 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.net.PlainSocketImpl.socketAccept(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.net.AbstractPlainSocketImpl.accept(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.net.ServerSocket.implAccept(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.net.ServerSocket.accept(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.DedicatedServerConnectionThread.run(DedicatedServerConnectionThread.java:62)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Thread-8
2013-02-27 17:59:48 [SEVERE]     PID: 23 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         com.griefcraft.modules.credits.CreditsModule$CreditsTask.run(CreditsModule.java:110)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Thread-15
2013-02-27 17:59:48 [SEVERE]     PID: 42 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         net.coreprotect.thread.CacheCleanUp.run(CacheCleanUp.java:14)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Timer-1
2013-02-27 17:59:48 [SEVERE]     PID: 48 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Object.wait(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.util.TimerThread.mainLoop(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.TimerThread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Thread-7
2013-02-27 17:59:48 [SEVERE]     PID: 22 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         com.griefcraft.util.DatabaseThread.run(DatabaseThread.java:161)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: DestroyJavaVM
2013-02-27 17:59:48 [SEVERE]     PID: 15 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: File IO Thread
2013-02-27 17:59:48 [SEVERE]     PID: 28 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.FileIOThread.b(SourceFile:43)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.FileIOThread.run(SourceFile:22)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Thread-5
2013-02-27 17:59:48 [SEVERE]     PID: 16 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.io.FileInputStream.readBytes(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.io.FileInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.io.BufferedInputStream.fill(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.io.BufferedInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.io.FilterInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.libs.jline.console.ConsoleReader$1.read(ConsoleReader.java:167)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.libs.jline.internal.InputStreamReader.read(InputStreamReader.java:267)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.libs.jline.internal.InputStreamReader.read(InputStreamReader.java:204)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readCharacter(ConsoleReader.java:995)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.libs.jline.console.ConsoleReader.readLine(ConsoleReader.java:1167)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.ThreadCommandReader.run(ThreadCommandReader.java:31)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Connection #7 write thread
2013-02-27 17:59:48 [SEVERE]     PID: 56 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Thread-13
2013-02-27 17:59:48 [SEVERE]     PID: 36 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         org.sqlite.NativeDB.step(Native Method)
2013-02-27 17:59:48 [SEVERE]         org.sqlite.DB.execute(DB.java:328)
2013-02-27 17:59:48 [SEVERE]         org.sqlite.DB.executeUpdate(DB.java:363)
2013-02-27 17:59:48 [SEVERE]         org.sqlite.PrepStmt.executeUpdate(PrepStmt.java:85)
2013-02-27 17:59:48 [SEVERE]         net.coreprotect.database.Database.insertBlock(Database.java:269)
2013-02-27 17:59:48 [SEVERE]         net.coreprotect.convert.Converter.stage2(Converter.java:705)
2013-02-27 17:59:48 [SEVERE]         net.coreprotect.convert.Converter.access$0(Converter.java:155)
2013-02-27 17:59:48 [SEVERE]         net.coreprotect.convert.Converter$1stage2.run(Converter.java:913)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Signal Dispatcher
2013-02-27 17:59:48 [SEVERE]     PID: 4 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Spigot Watchdog Thread
2013-02-27 17:59:48 [SEVERE]     PID: 18 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.dumpThreads(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.getAllStackTraces(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.util.WatchdogThread.run(WatchdogThread.java:60)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Spigot Metrics Gathering Thread
2013-02-27 17:59:48 [SEVERE]     PID: 19 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.util.TimedThread.run(TimedThread.java:29)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Server thread
2013-02-27 17:59:48 [SEVERE]     PID: 13 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.io.FileInputStream.read(Native Method)
2013-02-27 17:59:48 [SEVERE]         com.earth2me.essentials.EssentialsConf.load(EssentialsConf.java:57)
2013-02-27 17:59:48 [SEVERE]         com.earth2me.essentials.Warps.reloadConfig(Warps.java:113)
2013-02-27 17:59:48 [SEVERE]         com.earth2me.essentials.Warps.<init>(Warps.java:29)
2013-02-27 17:59:48 [SEVERE]         com.earth2me.essentials.Essentials.onEnable(Essentials.java:177)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.plugin.java.JavaPlugin.setEnabled(JavaPlugin.java:217)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:457)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:383)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.CraftServer.loadPlugin(CraftServer.java:308)
2013-02-27 17:59:48 [SEVERE]         org.bukkit.craftbukkit.v1_4_R1.CraftServer.enablePlugins(CraftServer.java:290)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.MinecraftServer.j(MinecraftServer.java:327)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.MinecraftServer.e(MinecraftServer.java:306)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.MinecraftServer.a(MinecraftServer.java:265)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.DedicatedServer.init(DedicatedServer.java:149)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.MinecraftServer.run(MinecraftServer.java:405)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.ThreadServerApplication.run(SourceFile:849)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Connection #7 read thread
2013-02-27 17:59:48 [SEVERE]     PID: 55 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.socketRead0(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.io.FilterInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.Packet.a(Packet.java:93)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:190)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Connection #8 write thread
2013-02-27 17:59:48 [SEVERE]     PID: 58 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.sleep(Native Method)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkWriterThread.run(NetworkWriterThread.java:38)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: process reaper
2013-02-27 17:59:48 [SEVERE]     PID: 10 | Alive: true | State: TIMED_WAITING
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         sun.misc.Unsafe.park(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.locks.LockSupport.parkNanos(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.SynchronousQueue$TransferStack.transfer(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.SynchronousQueue.poll(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.ThreadPoolExecutor.getTask(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.lang.Thread.run(Unknown Source)
2013-02-27 17:59:48 [SEVERE] ------------------------------
2013-02-27 17:59:48 [SEVERE] Current Thread: Connection #8 read thread
2013-02-27 17:59:48 [SEVERE]     PID: 57 | Alive: true | State: RUNNABLE
2013-02-27 17:59:48 [SEVERE]     Stack:
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.socketRead0(Native Method)
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.net.SocketInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         java.io.FilterInputStream.read(Unknown Source)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.Packet.a(Packet.java:93)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.i(NetworkManager.java:190)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkManager.c(NetworkManager.java:344)
2013-02-27 17:59:48 [SEVERE]         net.minecraft.server.v1_4_R1.NetworkReaderThread.run(SourceFile:93)
2013-02-27 17:59:48 [SEVERE] ------------------------------


and then when I restart the server again, core protect starts up normally...

2013-02-27 18:04:09 [INFO] [CoreProtect] Loading CoreProtect v2.0

But now, I can't access any records that were recorded before this happened. Core Protect will store new data, but I can't get anything that happened before this....

But the database.db file is around 2gb big, so I don't think it is all lost, is it?

I would like to get these records back, because there are some greifs that happened directly before this, and I need to undo them...