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How to trigger a download of occurrences at regional level (Brussels) for EU IAS derived list via rgbif (3.7.5).
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| library(rgbif) | |
| # specify keys of interest | |
| taxon_key_key <- "taxonKey" | |
| taxon_key_value <- c(2978552, # EU - IAS list | |
| 2489005, | |
| 3190653, | |
| 2498252, | |
| 3084923, | |
| 2340977, | |
| 2706080, | |
| 2502792, | |
| 3170247, | |
| 2440934, | |
| 3129663, | |
| 2882443, | |
| 2437394, | |
| 2437399, | |
| 3189935, | |
| 3169169, | |
| 4284921, | |
| 2704521, | |
| 2482499, | |
| 2702865, | |
| 2765942, | |
| 5329212, | |
| 2225776, | |
| 8979506, | |
| 5712056, | |
| 2350580, | |
| 2350570, | |
| 2984306, | |
| 6063677, | |
| 7287606, | |
| 3034825, | |
| 3628745, | |
| 3628608, | |
| 2434271, | |
| 2984537, | |
| 3034613, | |
| 2891770, | |
| 8848208, | |
| 2865565, | |
| 9799308, | |
| 2394486, | |
| 8114276, | |
| 5855350, | |
| 2427091, | |
| 5421039, | |
| 5420991, | |
| 2650436, | |
| 2869311, | |
| 5289808, | |
| 2394604, | |
| 2440946, | |
| 4264680, | |
| 5361785, | |
| 5361762, | |
| 2433536, | |
| 2434552, | |
| 5219858, | |
| 8909595, | |
| 8971201, | |
| 2498305, | |
| 2226990, | |
| 3086784, | |
| 5828232, | |
| 2390064, | |
| 4033648, | |
| 2870583, | |
| 7965247, | |
| 2227300, | |
| 9442269, | |
| 5218786, | |
| 5358460, | |
| 2362868, | |
| 2977647, | |
| 2486131, | |
| 5824863, | |
| 5274863, | |
| 5219681, | |
| 5219683, | |
| 5035187, | |
| 5035230, | |
| 5035017, | |
| 2437450, | |
| 2480764, | |
| 2443002, | |
| 3054399, | |
| 1311477, | |
| 1315391, | |
| 5217334) | |
| country_key <- "country" | |
| country_value <- "BE" | |
| gadm_gid_key <- "gadm" | |
| gadm_gid_value <- "BEL.1_1" | |
| basis_of_record_key <- "basisOfRecord" | |
| # no "LIVING_SPECIMEN" and "FOSSIL_SPECIMEN" | |
| basis_of_record_value <- c( | |
| "OBSERVATION", | |
| "HUMAN_OBSERVATION", | |
| "MATERIAL_SAMPLE", | |
| "LITERATURE", | |
| "PRESERVED_SPECIMEN", | |
| "UNKNOWN", | |
| "MACHINE_OBSERVATION" | |
| ) | |
| # trigger a GBIF download | |
| gbif_download <- rgbif::occ_download( | |
| pred_in(key = taxon_key_key, | |
| value = taxon_key_value), | |
| pred(key = country_key, | |
| value = country_value), | |
| pred(key = gadm_gid_key, | |
| value = gadm_gid_value), | |
| pred_in(key = basis_of_record_key, | |
| value = basis_of_record_value) | |
| ) |
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