run_main_cluster.sh

#!/bin/bash
#PBS -l walltime=06:00:00
#PBS -l nodes=1:ppn=1
#PBS -l pmem=8gb
#PBS -j oe
#PBS -t 0-99
#PBS -N rescience

echo "starting"
hostname
cd $PBS_O_WORKDIR
pwd

source activate HathwayGoodman
module load gcc-6.4

export TMPDIR=/beegfs/username/tmp

OUTDIR=$TMPDIR/$PBS_JOBID/$PBS_ARRAYID
mkdir -p $OUTDIR
trap 'rm -rf $OUTDIR' EXIT

for i in `seq 0 21`;
do
    mkdir -p $OUTDIR
    python main_cluster.py $PBS_ARRAYID $i $OUTDIR
    rm -rf $OUTDIR
done