danamlewis/master patch test fixes.md

## master patch test fixes.md

      
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              master patch test fixes.md
            
          
    1. Run an edited bootstrap

(Assuming you already have flashed jubilinux recently)
Copy and paste this bootstrap script instead of the current one in the docs:
#!/bin/bash
(
dmesg -D
echo Scanning for wifi networks:
ifup wlan0
wpa_cli scan
echo -e "\nStrongest networks found:"
wpa_cli scan_res | sort -grk 3 | head | awk -F '\t' '{print $NF}' | uniq
set -e
echo -e /"\nWARNING: this script will back up and remove all of your current wifi configs."
read -p "Press Ctrl-C to cancel, or press Enter to continue:" -r
echo -e "\nNOTE: Spaces in your network name or password are ok. Do not add quotes."
read -p "Enter your network name: " -r
SSID=$REPLY
read -p "Enter your network password: " -r
PSK=$REPLY
cd /etc/network
cp interfaces interfaces.$(date +%s).bak
echo -e "auto lo\niface lo inet loopback\n\nauto usb0\niface usb0 inet static\n  address 10.11.12.13\n  netmask 255.255.255.0\n\nauto wlan0\niface wlan0 inet dhcp\n  wpa-conf /etc/wpa_supplicant/wpa_supplicant.conf" > interfaces
echo -e "\n/etc/network/interfaces:\n"
cat interfaces
cd /etc/wpa_supplicant/
cp wpa_supplicant.conf wpa_supplicant.conf.$(date +%s).bak
echo -e "ctrl_interface=DIR=/var/run/wpa_supplicant GROUP=netdev\nupdate_config=1\nnetwork={\n  ssid=\"$SSID\"\n  psk=\"$PSK\"\n}" > wpa_supplicant.conf
echo -e "\n/etc/wpa_supplicant/wpa_supplicant.conf:\n"
cat wpa_supplicant.conf
echo -e "\nAttempting to bring up wlan0:\n"
ifdown wlan0; ifup wlan0
sleep 10
echo -ne "\nWifi SSID: "; iwgetid -r
sleep 5
curl https://raw.githubusercontent.com/cluckj/oref0/master/bin/openaps-install.sh > /tmp/openaps-install.sh
)

2. Run an edited install script

Copy and paste and run this:
#!/bin/bash
(
set -e

read -p "Enter your rig's new hostname (this will be your rig's "name" in the future, so make sure to write it down): " -r
myrighostname=$REPLY
echo $myrighostname > /etc/hostname
sed -r -i"" "s/localhost( jubilinux)?$/localhost $myrighostname/" /etc/hosts
sed -r -i"" "s/127.0.1.1.*$/127.0.1.1       $myrighostname/" /etc/hosts

# if passwords are old, force them to be changed at next login
passwd -S edison 2>/dev/null | grep 20[01][0-6] && passwd -e root
# automatically expire edison account if its password is not changed in 3 days
passwd -S edison 2>/dev/null | grep 20[01][0-6] && passwd -e edison -i 3

if [ -e /run/sshwarn ] ; then
    echo Please select a secure password for ssh logins to your rig:
    echo 'For the "root" account:'
    passwd root
    echo 'And for the "pi" account (same password is fine):'
    passwd pi
fi

grep "PermitRootLogin yes" /etc/ssh/sshd_config || echo "PermitRootLogin yes" > /etc/ssh/sshd_config

# set timezone
dpkg-reconfigure tzdata

#Workarounds for Jubilinux v0.2.0 (Debian Jessie) migration to LTS
if cat /etc/os-release | grep 'PRETTY_NAME="Debian GNU/Linux 8 (jessie)"' &> /dev/null; then
    #Disable validity check for archived Debian repos
    echo "Acquire::Check-Valid-Until false;" | tee -a /etc/apt/apt.conf.d/10-nocheckvalid
    #Replace apt sources.list with new archive.debian.org locations
    echo -e "deb http://security.debian.org/ jessie/updates main\n#deb-src http://security.debian.org/ jessie/updates main\n\ndeb http://archive.debian.org/debian/ jessie-backports main\n#deb-src http://archive.debian.org/debian/ jessie-backports main\n\ndeb http://archive.debian.org/debian/ jessie main contrib non-free\n#deb-src http://archive.debian.org/debian/ jessie main contrib non-free" > /etc/apt/sources.list
fi

#Workaround for Jubilinux to install nodejs/npm from nodesource
if getent passwd edison &> /dev/null; then
    #Use nodesource setup script to add nodesource repository to sources.list.d
    curl -sL https://deb.nodesource.com/setup_8.x | bash -
fi

#dpkg -P nodejs nodejs-dev
# TODO: remove the `-o Acquire::ForceIPv4=true` once Debian's mirrors work reliably over IPv6
apt-get -o Acquire::ForceIPv4=true update && apt-get -o Acquire::ForceIPv4=true -y dist-upgrade && apt-get -o Acquire::ForceIPv4=true -y autoremove
apt-get -o Acquire::ForceIPv4=true update && apt-get -o Acquire::ForceIPv4=true install -y sudo strace tcpdump screen acpid vim python-pip locate ntpdate
#check if edison user exists before trying to add it to groups

if  getent passwd edison > /dev/null; then
  echo "Adding edison to sudo users"
  adduser edison sudo
  echo "Adding edison to dialout users"
  adduser edison dialout
 # else
  # echo "User edison does not exist. Apparently, you are runnning a non-edison setup."
fi

sed -i "s/daily/hourly/g" /etc/logrotate.conf
sed -i "s/#compress/compress/g" /etc/logrotate.conf

curl -s https://raw.githubusercontent.com/cluckj/oref0/master/bin/openaps-packages.sh | bash -
mkdir -p ~/src; cd ~/src && git clone git://github.com/cluckj/oref0.git || (cd oref0 && git checkout master && git pull)
echo "Press Enter to run oref0-setup with the current release (master branch) of oref0,"
read -p "or press ctrl-c to cancel. " -r
cd && ~/src/oref0/bin/oref0-setup.sh
)

3. Hit enter and keep going

As directed, hit enter to continue the setup process. Follow the rest of the docs for installing oref0: https://openaps.readthedocs.io/en/latest/docs/Build%20Your%20Rig/OpenAPS-install.html#be-prepared-to-enter-the-following-information-into-the-setup-script