Download data from the sequence read archive and convert to fastq format

sra_to_fastq.sh

Download_SRP_Runs() {
    SRP_IDs=`esearch -db sra -query $1 | efetch -format docsum | xtract -pattern DocumentSummary -element Run@acc | tr '\t' '\n'`
    for r in ${SRP_IDs}; do
        url="ftp://ftp-trace.ncbi.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/${r:0:6}/${r}/${r}.sra"
        wget $url
    done;
}

Download_SRP_Runs <SRP ID GOES HERE>

# Convert to fastq
parallel fastq-dump --split-files --gzip {} ::: *.sra

# Perform quality control
parallel fastqc {} ::: *.fastq.gz

url="ftp://ftp-trace.ncbi.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/${r:0:6}/${r}/${r}.sra"

Just seeing this but thank you very much!