finding a reference and creating the feature in experiments_controller.rb (lines 76 - 93)

gistfile1.txt

        ref = Reference.find(:first, :conditions => ["name = ? AND genome_id = ?", "#{ record.seqname }", "#{@experiment.genome_id}"])

        feature = Feature.new(
          :group => "#{attribute}",
          :feature => "#{record.feature}",
          :source => "#{record.source}",
          :start => "#{record.start}",
          :end => "#{record.end}", 
          :strand => "#{record.strand}",
          :phase => "#{record.frame}",
          :seqid => "#{record.seqname}",
          :score => "#{record.score}",
          #:experiment_id => "#{exp.id}",
          :gff_id =>  "#{gff_id}",
          :sequence => "#{seq}",
          :quality => "#{qual}",
          :reference_id => "#{ref.id}"
          )