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Svidro / !Making Measurements in QuPath
Last active May 1, 2024 09:16
Making Measurements in QuPath
Collections of scripts harvested mainly from Pete, but also picked up from the forums
TOC
Accessing dynamic measurements.groovy - Most annotation measurements are dynamically created when you click on the annotation, and
are not accessible through the standard getMeasurement function. This is a way around that.
Affine transformation.groovy - access more accurate measurements for the affine transformation used in the image alignment (m5/m6+)
Alignment of local cells.groovy - check neighborhood for similarly aligned cells