| #!/bin/bash | |
| export PATH=${SRC_DIR}/.nimble/bin:${SRC_DIR}/nim/bin/:$PATH | |
| export NIMBLE_DIR=${SRC_DIR}/.nimble/ | |
| for path in $(find $CONDA_PREFIX/bin/ -name "x86_64-*" -type f); do | |
| basename $path | sed 's/x86_64-conda-linux-gnu-//' | |
| done | xargs -IX ln -s $CONDA_PREFIX/bin/x86_64-conda-linux-gnu-X $CONDA_PREFIX/bin/X | |
| export RUSTFLAGS=-Ctarget-feature=-crt-static |
Instructions for setting up Python for both using Python-based applications and developing such applications yourself. Instructions are for mac OS only.
These are mostly notes for myself.
This will install pyenv and set the global interpreter (not the system interpreter) to a reasonably recent Python version.
| from datetime import datetime | |
| from functools import singledispatch | |
| class State: | |
| def __init__(self, meta): | |
| self.meta = meta | |
| def has_failed(self): | |
| return isinstance(self, Failed) |
| from gwf import AnonymousTarget | |
| def template_one(bam_file, bar=False): | |
| inputs = {'bam_file': bam_file} | |
| outputs = {'bar_file': 'bar.{bam_file}'.format(bam_file=bam_file)} | |
| if bar: | |
| options = {'cores': 16} | |
| else: | |
| options = {} |
| {% set version="1.1.0" %} | |
| {% set revision="d12cf224f7a488b913eabbcf54a215e17238032c" %} | |
| package: | |
| name: svaba | |
| version: {{ version }} | |
| source: | |
| # Needs to do recursive Git clone to get sub modules | |
| git_url: https://github.com/walaj/svaba.git | |
| git_rev: {{ revision }} |
| $ ldd svaba | |
| ./svaba: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by ./svaba) | |
| ./svaba: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by ./svaba) | |
| ./svaba: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by ./svaba) | |
| ./svaba: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by ./svaba) | |
| linux-vdso.so.1 => (0x00007fff10d6f000) | |
| liblzma.so.5 => /lib64/liblzma.so.5 (0x00007fb72874d000) | |
| libbz2.so.1.0 => not found | |
| libz.so.1 => /lib64/libz.so.1 (0x00007fb728537000) | |
| librt.so.1 => /lib64/librt.so.1 (0x00007fb72832f000) |
| University | Country | |
|---|---|---|
| 3iL École d'ingénieurs | fr | |
| A.T. Still University | us | |
| Aalborg Universitet | dk | |
| Aalto-yliopisto | fi | |
| Aarhus Universitet | dk | |
| Aba Teachers University | cn | |
| Abant Izzet Baysal Üniversitesi | tr | |
| Abasyn University | pk | |
| Abbottabad University of Science and Technology | pk |
| NO_FILLVALUE = object() | |
| def iterk(iterable, k, fillvalue=NO_FILLVALUE): | |
| """Iterate over *k* entries at a time | |
| Make an iterator that yields *k* elements of *iterable* at a time. If the | |
| length of *iterable* is not a multiple of *k*, *fillvalue* will be used to | |
| fill out the remaining elements. If no *fillvalue* is set, the remaining | |
| elements will be ignored. |
| def call_count(func): | |
| def wrapper(*args, **kwargs): | |
| wrapper.call_count += 1 | |
| return func(*args, **kwargs) | |
| wrapper.call_count = 0 | |
| return wrapper | |
| @call_count | |
| def foo(x): |