Created
November 4, 2016 00:53
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Install netCDF4 in Ubuntu
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#!/bin/bash | |
# Script to install hdf5 and netCDF4 libraries on a Linux Ubuntu system | |
# After: https://code.google.com/p/netcdf4-python/wiki/UbuntuInstall | |
# And http://unidata.github.io/netcdf4-python/ | |
# You can check for newer version of the programs on | |
# ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/ | |
# and other sources | |
BASHRC="~/.bashrc" | |
# Install zlib | |
v=1.2.8 | |
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/zlib-${v}.tar.gz | |
tar -xf zlib-${v}.tar.gz && cd zlib-${v} | |
./configure --prefix=/usr/local | |
#sudo make check install | |
sudo make install | |
cd .. | |
# Install HDF5 | |
v=1.8.13 | |
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-${v}.tar.gz | |
tar -xf hdf5-${v}.tar.gz && cd hdf5-${v} | |
prefix="/usr/local/hdf5-$v" | |
if [ $HDF5_DIR != $prefix ]; then | |
echo "Add HDF5_DIR=$prefix to .bashrc" | |
echo "" >> $BASHRC | |
echo "# HDF5 libraries for python" >> $BASHRC | |
echo export HDF5_DIR=$prefix >> $BASHRC | |
fi | |
./configure --enable-shared --enable-hl --prefix=$HDF5_DIR | |
make -j 2 # 2 for number of procs to be used | |
sudo make install | |
cd .. | |
# Install Netcdf | |
v=4.1.3 | |
wget http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-${v}.tar.gz | |
tar -xf netcdf-${v}.tar.gz && cd netcdf-${v} | |
prefix="/usr/local/" | |
if [ $NETCDF4_DIR != $prefix ]; then | |
echo "Add NETCDF4_DIR=$prefix to .bashrc" | |
echo "" >> $BASHRC | |
echo "# NETCDF4 libraries for python" >> $BASHRC | |
echo export NETCDF4_DIR=$prefix >> $BASHRC | |
fi | |
CPPFLAGS=-I$HDF5_DIR/include LDFLAGS=-L$HDF5_DIR/lib ./configure --enable-netcdf-4 --enable-shared --enable-dap --prefix=$NETCDF4_DIR | |
# make check | |
make | |
sudo make install | |
cd .. | |
# install python's netCDF4 | |
sudo -E pip install netCDF4 --upgrade |
Hello,
Is there a way to uninstall this?
Be careful when running this script as installing a new version of zlib on top of a previous one can break library dependencies (it happened to me). Maybe it would be better to first check whether zlib is already available
HELP!! After running the script I get errors of installation. I delete the generated data and then reboot, then Ubuntu cannot longer initialise, does anybody knows how can I fix this problem? I can access to GRUB, but Ubuntu gets stucked and don't initialise.
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Legendary script