Created
March 3, 2020 22:52
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Arches 5.0 Docker setup
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| ~/Research/archesdemo $ docker-compose up | |
| Creating elasticsearch ... done | |
| Creating letsencrypt ... done | |
| Creating couchdb ... done | |
| Creating db ... done | |
| Creating arches ... done | |
| Creating nginx ... done | |
| Attaching to letsencrypt, elasticsearch, couchdb, db, arches, nginx | |
| arches | Full command: run_arches | |
| arches | Command: run_arches | |
| arches | Testing if database server is up... | |
| db | Add rule to pg_hba: 0.0.0.0/0 | |
| db | Add rule to pg_hba: replication replicator | |
| db | Setup master database | |
| letsencrypt | Running on localhost, so not downloading certificates. Exiting... | |
| letsencrypt exited with code 0 | |
| nginx | | |
| nginx | Initializing NginX to run on: localhost | |
| nginx | | |
| nginx | Setting Nginx up as reverse proxy for **local** Docker container: arches... | |
| nginx | Copying Nginx configuration files... | |
| nginx | Setting NginX conf to use certificates in /etc/letsencrypt/live/localhost... | |
| nginx | Running Nginx on in the foreground | |
| nginx | 2020/03/03 22:28:08 [warn] 8#8: "ssl_stapling" ignored, no OCSP responder URL in the certificate "/etc/letsencrypt/live/localhost/fullchain.pem" | |
| nginx | nginx: [warn] "ssl_stapling" ignored, no OCSP responder URL in the certificate "/etc/letsencrypt/live/localhost/fullchain.pem" | |
| elasticsearch | OpenJDK 64-Bit Server VM warning: Option UseConcMarkSweepGC was deprecated in version 9.0 and will likely be removed in a future release. | |
| db | psql: error: could not connect to server: could not connect to server: No such file or directory | |
| db | Is the server running locally and accepting | |
| db | connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"? | |
| db | 2020-03-03 22:28:11.314 UTC [27] LOG: starting PostgreSQL 12.2 (Debian 12.2-2.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit | |
| db | 2020-03-03 22:28:11.314 UTC [27] LOG: listening on IPv4 address "127.0.0.1", port 5432 | |
| db | 2020-03-03 22:28:11.323 UTC [27] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432" | |
| db | 2020-03-03 22:28:11.397 UTC [39] LOG: database system was shut down at 2020-02-25 12:51:23 UTC | |
| db | 2020-03-03 22:28:11.419 UTC [27] LOG: database system is ready to accept connections | |
| db | List of databases | |
| db | Name | Owner | Encoding | Collate | Ctype | Access privileges | |
| db | -----------+----------+----------+---------+---------+----------------------- | |
| db | postgres | postgres | UTF8 | C.UTF-8 | C.UTF-8 | | |
| db | template0 | postgres | UTF8 | C.UTF-8 | C.UTF-8 | =c/postgres + | |
| db | | | | | | postgres=CTc/postgres | |
| db | template1 | postgres | UTF8 | C.UTF-8 | C.UTF-8 | =c/postgres + | |
| db | | | | | | postgres=CTc/postgres | |
| db | (3 rows) | |
| db | | |
| db | postgres ready | |
| db | Setup postgres User:Password | |
| db | Creating superuser postgres | |
| db | ALTER ROLE | |
| db | Creating replication user replicator | |
| db | CREATE ROLE | |
| db | postgres db already exists | |
| db | List of databases | |
| db | Name | Owner | Encoding | Collate | Ctype | Access privileges | |
| db | -----------+----------+----------+---------+---------+----------------------- | |
| db | postgres | postgres | UTF8 | C.UTF-8 | C.UTF-8 | | |
| db | template0 | postgres | UTF8 | C.UTF-8 | C.UTF-8 | =c/postgres + | |
| db | | | | | | postgres=CTc/postgres | |
| db | template1 | postgres | UTF8 | C.UTF-8 | C.UTF-8 | =c/postgres + | |
| db | | | | | | postgres=CTc/postgres | |
| db | (3 rows) | |
| db | | |
| db | /docker-entrypoint.sh: running /docker-entrypoint-initdb.d/init.sql | |
| db | psql:/docker-entrypoint-initdb.d/init.sql: error: could not read from input file: Is a directory | |
| db | | |
| db | 2020-03-03 22:28:13.124 UTC [27] LOG: received smart shutdown request | |
| db | 2020-03-03 22:28:13.138 UTC [27] LOG: background worker "logical replication launcher" (PID 45) exited with exit code 1 | |
| db | 2020-03-03 22:28:13.139 UTC [40] LOG: shutting down | |
| db | 2020-03-03 22:28:13.193 UTC [27] LOG: database system is shut down | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:13,716Z", "level": "INFO", "component": "o.e.e.NodeEnvironment", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "using [1] data paths, mounts [[/usr/share/elasticsearch/data (/dev/sda1)]], net usable_space [43.6gb], net total_space [58.4gb], types [ext4]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:13,722Z", "level": "INFO", "component": "o.e.e.NodeEnvironment", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "heap size [386.6mb], compressed ordinary object pointers [true]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:13,733Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "node name [ceeca20511f1], node ID [XKbpzIF3TXah1X1JNsIAYQ], cluster name [docker-cluster]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:13,734Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "version[7.5.1], pid[1], build[default/docker/3ae9ac9a93c95bd0cdc054951cf95d88e1e18d96/2019-12-16T22:57:37.835892Z], OS[Linux/4.19.76-linuxkit/amd64], JVM[AdoptOpenJDK/OpenJDK 64-Bit Server VM/13.0.1/13.0.1+9]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:13,736Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "JVM home [/usr/share/elasticsearch/jdk]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:13,738Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "JVM arguments [-Des.networkaddress.cache.ttl=60, -Des.networkaddress.cache.negative.ttl=10, -XX:+AlwaysPreTouch, -Xss1m, -Djava.awt.headless=true, -Dfile.encoding=UTF-8, -Djna.nosys=true, -XX:-OmitStackTraceInFastThrow, -Dio.netty.noUnsafe=true, -Dio.netty.noKeySetOptimization=true, -Dio.netty.recycler.maxCapacityPerThread=0, -Dio.netty.allocator.numDirectArenas=0, -Dlog4j.shutdownHookEnabled=false, -Dlog4j2.disable.jmx=true, -Djava.locale.providers=COMPAT, -Xms1g, -Xmx1g, -XX:+UseConcMarkSweepGC, -XX:CMSInitiatingOccupancyFraction=75, -XX:+UseCMSInitiatingOccupancyOnly, -Djava.io.tmpdir=/tmp/elasticsearch-7349473778430179926, -XX:+HeapDumpOnOutOfMemoryError, -XX:HeapDumpPath=data, -XX:ErrorFile=logs/hs_err_pid%p.log, -Xlog:gc*,gc+age=trace,safepoint:file=logs/gc.log:utctime,pid,tags:filecount=32,filesize=64m, -Des.cgroups.hierarchy.override=/, -Xms400m, -Xmx400m, -XX:MaxDirectMemorySize=209715200, -Des.path.home=/usr/share/elasticsearch, -Des.path.conf=/usr/share/elasticsearch/config, -Des.distribution.flavor=default, -Des.distribution.type=docker, -Des.bundled_jdk=true]" } | |
| db | Postgres initialisation process completed .... restarting in foreground | |
| db | 2020-03-03 22:28:14.181 UTC [151] LOG: starting PostgreSQL 12.2 (Debian 12.2-2.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit | |
| db | 2020-03-03 22:28:14.185 UTC [151] LOG: listening on IPv4 address "0.0.0.0", port 5432 | |
| db | 2020-03-03 22:28:14.192 UTC [151] LOG: listening on IPv6 address "::", port 5432 | |
| db | 2020-03-03 22:28:14.199 UTC [151] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432" | |
| db | 2020-03-03 22:28:14.237 UTC [153] LOG: database system was shut down at 2020-03-03 22:28:13 UTC | |
| db | 2020-03-03 22:28:14.258 UTC [151] LOG: database system is ready to accept connections | |
| couchdb | [info] 2020-03-03T22:28:15.191449Z nonode@nohost <0.7.0> -------- Application couch_log started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:15.228114Z nonode@nohost <0.7.0> -------- Application folsom started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:15.264161Z nonode@nohost <0.47.0> -------- alarm_handler: {set,{system_memory_high_watermark,[]}} | |
| couchdb | [info] 2020-03-03T22:28:15.468407Z nonode@nohost <0.7.0> -------- Application couch_stats started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:15.468897Z nonode@nohost <0.7.0> -------- Application khash started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:15.506152Z nonode@nohost <0.7.0> -------- Application couch_event started on node nonode@nohost | |
| arches | Database server is up | |
| arches | Testing if Elasticsearch is up... | |
| arches | Elasticsearch is up | |
| arches | Checking if database archesdemo exists... | |
| couchdb | [info] 2020-03-03T22:28:15.566070Z nonode@nohost <0.7.0> -------- Application ibrowse started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:15.634835Z nonode@nohost <0.7.0> -------- Application ioq started on node nonode@nohost | |
| arches | Database archesdemo does not exists yet, starting setup... | |
| arches | Current work directory: /web_root/arches | |
| arches | | |
| arches | | |
| arches | *** Initializing database *** | |
| arches | | |
| arches | *** Any existing Arches database will be deleted *** | |
| arches | | |
| arches | | |
| arches | 5 | |
| couchdb | [info] 2020-03-03T22:28:15.635342Z nonode@nohost <0.7.0> -------- Application mochiweb started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:15.686090Z nonode@nohost <0.195.0> -------- Apache CouchDB 2.1.1 is starting. | |
| couchdb | | |
| couchdb | [info] 2020-03-03T22:28:15.686537Z nonode@nohost <0.196.0> -------- Starting couch_sup | |
| couchdb | [notice] 2020-03-03T22:28:15.793262Z nonode@nohost <0.82.0> -------- config: [admins] admin set to -pbkdf2-88ef5f9e36f8e6458699cc0ee1cdc71761c9cf34,31816c3b9a9817c91640dd8212859330,10 for reason nil | |
| couchdb | [notice] 2020-03-03T22:28:15.845509Z nonode@nohost <0.82.0> -------- config: [couchdb] uuid set to bb177d920f0343eb54bead62fd051ca2 for reason nil | |
| arches | 4 | |
| couchdb | [info] 2020-03-03T22:28:17.212357Z nonode@nohost <0.201.0> -------- open_result error {not_found,no_db_file} for _users | |
| couchdb | [info] 2020-03-03T22:28:17.387306Z nonode@nohost <0.195.0> -------- Apache CouchDB has started. Time to relax. | |
| couchdb | | |
| couchdb | [info] 2020-03-03T22:28:17.387599Z nonode@nohost <0.195.0> -------- Apache CouchDB has started on http://any:5986/ | |
| couchdb | [info] 2020-03-03T22:28:17.387964Z nonode@nohost <0.7.0> -------- Application couch started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.388077Z nonode@nohost <0.7.0> -------- Application ets_lru started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.492705Z nonode@nohost <0.261.0> -------- Opening index for db: _users idx: _design/_auth sig: "3e823c2a4383ac0c18d4e574135a5b08" | |
| couchdb | [info] 2020-03-03T22:28:17.506927Z nonode@nohost <0.7.0> -------- Application rexi started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.555924Z nonode@nohost <0.201.0> -------- open_result error {not_found,no_db_file} for _nodes | |
| couchdb | [warning] 2020-03-03T22:28:17.556027Z nonode@nohost <0.278.0> -------- creating missing database: _nodes | |
| couchdb | [info] 2020-03-03T22:28:17.599596Z nonode@nohost <0.201.0> -------- open_result error {not_found,no_db_file} for _dbs | |
| couchdb | [warning] 2020-03-03T22:28:17.599656Z nonode@nohost <0.291.0> -------- creating missing database: _dbs | |
| couchdb | [warning] 2020-03-03T22:28:17.599716Z nonode@nohost <0.290.0> -------- creating missing database: _dbs | |
| couchdb | [info] 2020-03-03T22:28:17.622930Z nonode@nohost <0.7.0> -------- Application mem3 started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.623354Z nonode@nohost <0.7.0> -------- Application fabric started on node nonode@nohost | |
| arches | 3 | |
| couchdb | [info] 2020-03-03T22:28:17.714398Z nonode@nohost <0.7.0> -------- Application chttpd started on node nonode@nohost | |
| couchdb | [notice] 2020-03-03T22:28:17.739450Z nonode@nohost <0.327.0> -------- chttpd_auth_cache changes listener died database_does_not_exist at mem3_shards:load_shards_from_db/6(line:403) <= mem3_shards:load_shards_from_disk/1(line:378) <= mem3_shards:load_shards_from_disk/2(line:407) <= mem3_shards:for_docid/3(line:91) <= fabric_doc_open:go/3(line:38) <= chttpd_auth_cache:ensure_auth_ddoc_exists/2(line:187) <= chttpd_auth_cache:listen_for_changes/1(line:134) | |
| couchdb | [error] 2020-03-03T22:28:17.740371Z nonode@nohost emulator -------- Error in process <0.328.0> with exit value: {database_does_not_exist,[{mem3_shards,load_shards_from_db,"_users",[{file,"src/mem3_shards.erl"},{line,403}]},{mem3_shards,load_shards_from_disk,1,[{file,"src/mem3_shards.erl"},{line,378}]},{mem3_shards,load_shards_from_disk... | |
| couchdb | [info] 2020-03-03T22:28:17.753066Z nonode@nohost <0.7.0> -------- Application couch_index started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.753368Z nonode@nohost <0.7.0> -------- Application couch_mrview started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.754862Z nonode@nohost <0.7.0> -------- Application couch_plugins started on node nonode@nohost | |
| couchdb | [notice] 2020-03-03T22:28:17.869884Z nonode@nohost <0.82.0> -------- config: [features] scheduler set to true for reason nil | |
| couchdb | [info] 2020-03-03T22:28:17.919379Z nonode@nohost <0.201.0> -------- open_result error {not_found,no_db_file} for _replicator | |
| couchdb | [notice] 2020-03-03T22:28:17.929580Z nonode@nohost <0.344.0> -------- creating replicator ddoc <<"_replicator">> | |
| couchdb | [info] 2020-03-03T22:28:17.949751Z nonode@nohost <0.7.0> -------- Application couch_replicator started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:17.971023Z nonode@nohost <0.7.0> -------- Application couch_peruser started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:18.036550Z nonode@nohost <0.7.0> -------- Application ddoc_cache started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:18.080153Z nonode@nohost <0.7.0> -------- Application global_changes started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:18.080846Z nonode@nohost <0.7.0> -------- Application jiffy started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:18.128914Z nonode@nohost <0.7.0> -------- Application mango started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:18.152576Z nonode@nohost <0.7.0> -------- Application setup started on node nonode@nohost | |
| couchdb | [info] 2020-03-03T22:28:18.153239Z nonode@nohost <0.7.0> -------- Application snappy started on node nonode@nohost | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,565Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [aggs-matrix-stats]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,566Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [analysis-common]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,567Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [flattened]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,567Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [frozen-indices]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,568Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [ingest-common]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,569Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [ingest-geoip]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,569Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [ingest-user-agent]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,571Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [lang-expression]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,572Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [lang-mustache]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,573Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [lang-painless]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,574Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [mapper-extras]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,574Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [parent-join]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,575Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [percolator]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,576Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [rank-eval]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,577Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [reindex]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,578Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [repository-url]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,578Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [search-business-rules]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,579Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [spatial]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,580Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [transform]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,580Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [transport-netty4]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,581Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [vectors]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,581Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-analytics]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,582Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-ccr]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,582Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-core]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,583Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-deprecation]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,584Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-enrich]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,584Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-graph]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,585Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-ilm]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,585Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-logstash]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,586Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-ml]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,586Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-monitoring]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,587Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-rollup]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,587Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-security]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,588Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-sql]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,588Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-voting-only-node]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,589Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "loaded module [x-pack-watcher]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:18,590Z", "level": "INFO", "component": "o.e.p.PluginsService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "no plugins loaded" } | |
| arches | 2 | |
| arches | 1 | |
| arches | 0 | |
| arches | | |
| arches | Running: python manage.py setup_db --force | |
| db | 2020-03-03 22:28:22.593 UTC [162] postgres@postgres ERROR: template database "template_postgis" does not exist | |
| db | 2020-03-03 22:28:22.593 UTC [162] postgres@postgres STATEMENT: | |
| db | CREATE DATABASE archesdemo | |
| db | WITH OWNER = postgres | |
| db | ENCODING = 'UTF8' | |
| db | CONNECTION LIMIT=-1 | |
| db | TEMPLATE = template_postgis; | |
| arches | Drop and recreate the database... | |
| arches | | |
| arches | SELECT pg_terminate_backend(pid) FROM pg_stat_activity | |
| arches | WHERE datname IN ('archesdemo', 'template_postgis'); | |
| arches | | |
| arches | DROP DATABASE IF EXISTS archesdemo; | |
| arches | | |
| arches | CREATE DATABASE archesdemo | |
| arches | WITH OWNER = postgres | |
| arches | ENCODING = 'UTF8' | |
| arches | CONNECTION LIMIT=-1 | |
| arches | TEMPLATE = template_postgis; | |
| arches | | |
| arches | ERROR: template database "template_postgis" does not exist | |
| arches | | |
| arches | It looks like your PostGIS template database is not correctly referenced in | |
| arches | settings.py/settings_local.py, or it has not yet been created. | |
| arches | | |
| arches | To create it, use: | |
| arches | | |
| arches | psql -U postgres -c "CREATE DATABASE template_postgis;" | |
| arches | psql -U postgres -d template_postgis -c "CREATE EXTENSION postgis;" | |
| arches | | |
| arches | /web_root/arches/arches/app/search/base_index.py:12: SyntaxWarning: "is" with a literal. Did you mean "=="? | |
| arches | if index_name is None or index_name is "": | |
| couchdb | [error] 2020-03-03T22:28:22.730802Z nonode@nohost emulator -------- Error in process <0.465.0> with exit value: {database_does_not_exist,[{mem3_shards,load_shards_from_db,"_users",[{file,"src/mem3_shards.erl"},{line,403}]},{mem3_shards,load_shards_from_disk,1,[{file,"src/mem3_shards.erl"},{line,378}]},{mem3_shards,load_shards_from_disk... | |
| couchdb | [notice] 2020-03-03T22:28:22.732101Z nonode@nohost <0.327.0> -------- chttpd_auth_cache changes listener died database_does_not_exist at mem3_shards:load_shards_from_db/6(line:403) <= mem3_shards:load_shards_from_disk/1(line:378) <= mem3_shards:load_shards_from_disk/2(line:407) <= mem3_shards:for_docid/3(line:91) <= fabric_doc_open:go/3(line:38) <= chttpd_auth_cache:ensure_auth_ddoc_exists/2(line:187) <= chttpd_auth_cache:listen_for_changes/1(line:134) | |
| arches | Running: Creating couchdb system databases | |
| arches | % Total % Received % Xferd Average Speed Time Time Time Current | |
| arches | Dload Upload Total Spent Left Speed | |
| couchdb | [error] 2020-03-03T22:28:23.112609Z nonode@nohost <0.449.0> 7346d25530 Request to create N=3 DB but only 1 node(s) | |
| 100 12 100 12 0 0 34 0 --:--:-- --:--:-- --:--:-- 34 | |
| arches | {"ok":true} | |
| couchdb | [notice] 2020-03-03T22:28:23.304387Z nonode@nohost <0.449.0> 7346d25530 couchdb:5984 172.19.0.4 admin PUT /_users 201 ok 283 | |
| arches | % Total % Received % Xferd Average Speed Time Time Time Current | |
| arches | Dload Upload Total Spent Left Speed | |
| couchdb | [error] 2020-03-03T22:28:23.321820Z nonode@nohost <0.450.0> 74d710a33a Request to create N=3 DB but only 1 node(s) | |
| 100 12 100 12 0 0 279 0 --:--:-- --:--:-- --:--:-- 279 | |
| couchdb | [notice] 2020-03-03T22:28:23.358028Z nonode@nohost <0.450.0> 74d710a33a couchdb:5984 172.19.0.4 admin PUT /_global_changes 201 ok 37 | |
| arches | {"ok":true} | |
| arches | % Total % Received % Xferd Average Speed Time Time Time Current | |
| arches | Dload Upload Total Spent Left Speed | |
| couchdb | [error] 2020-03-03T22:28:23.377151Z nonode@nohost <0.451.0> 0e73ce8079 Request to create N=3 DB but only 1 node(s) | |
| 100 12 100 12 0 0 255 0 --:--:-- --:--:-- --:--:-- 255 | |
| arches | {"ok":true} | |
| couchdb | [notice] 2020-03-03T22:28:23.418164Z nonode@nohost <0.451.0> 0e73ce8079 couchdb:5984 172.19.0.4 admin PUT /_replicator 201 ok 42 | |
| arches | psql: error: could not connect to server: FATAL: database "archesdemo" does not exist | |
| arches | Running: python manage.py packages -o import_graphs | |
| db | 2020-03-03 22:28:23.529 UTC [163] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:25,073Z", "level": "INFO", "component": "o.e.x.s.a.s.FileRolesStore", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "parsed [0] roles from file [/usr/share/elasticsearch/config/roles.yml]" } | |
| db | 2020-03-03 22:28:25.215 UTC [164] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| arches | operation: import_graphs | |
| arches | /web_root/arches/arches/db/graphs/branches/Information Resource Copyright.json | |
| arches | Traceback (most recent call last): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | psycopg2.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| arches | | |
| arches | The above exception was the direct cause of the following exception: | |
| arches | | |
| arches | Traceback (most recent call last): | |
| arches | File "manage.py", line 27, in <module> | |
| arches | execute_from_command_line(sys.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 381, in execute_from_command_line | |
| arches | utility.execute() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 375, in execute | |
| arches | self.fetch_command(subcommand).run_from_argv(self.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 323, in run_from_argv | |
| arches | self.execute(*args, **cmd_options) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 364, in execute | |
| arches | output = self.handle(*args, **options) | |
| arches | File "/web_root/arches/arches/management/commands/packages.py", line 254, in handle | |
| arches | self.import_graphs(options["source"]) | |
| arches | File "/web_root/arches/arches/management/commands/packages.py", line 1038, in import_graphs | |
| arches | ResourceGraphImporter(archesfile["graph"], overwrite_graphs) | |
| arches | File "/web_root/arches/arches/app/utils/data_management/resource_graphs/importer.py", line 69, in import_graph | |
| arches | with transaction.atomic(): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/transaction.py", line 175, in __enter__ | |
| arches | if not connection.get_autocommit(): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 379, in get_autocommit | |
| arches | self.ensure_connection() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/utils.py", line 89, in __exit__ | |
| arches | raise dj_exc_value.with_traceback(traceback) from exc_value | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | django.db.utils.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| db | 2020-03-03 22:28:25.565 UTC [165] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| arches | psql: error: could not connect to server: FATAL: database "archesdemo" does not exist | |
| arches | Running: python manage.py packages -o import_reference_data -s "arches/db/schemes/arches_concept_scheme.rdf" | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:26,418Z", "level": "INFO", "component": "o.e.x.m.p.l.CppLogMessageHandler", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "[controller/104] [Main.cc@110] controller (64 bit): Version 7.5.1 (Build ae3c3c51b849be) Copyright (c) 2019 Elasticsearch BV" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:27,779Z", "level": "DEBUG", "component": "o.e.a.ActionModule", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "Using REST wrapper from plugin org.elasticsearch.xpack.security.Security" } | |
| couchdb | [notice] 2020-03-03T22:28:27.801650Z nonode@nohost <0.348.0> -------- couch_replicator_clustering : cluster stable | |
| couchdb | [notice] 2020-03-03T22:28:27.810290Z nonode@nohost <0.364.0> -------- Started replicator db changes listener <0.722.0> | |
| couchdb | [notice] 2020-03-03T22:28:27.876376Z nonode@nohost <0.722.0> -------- creating replicator ddoc <<"shards/80000000-9fffffff/_replicator.1583274503">> | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:28,228Z", "level": "INFO", "component": "o.e.d.DiscoveryModule", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "using discovery type [single-node] and seed hosts providers [settings]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,031Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "initialized" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,031Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "starting ..." } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,360Z", "level": "INFO", "component": "o.e.t.TransportService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "publish_address {172.19.0.3:9300}, bound_addresses {0.0.0.0:9300}" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,684Z", "level": "INFO", "component": "o.e.c.c.Coordinator", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "setting initial configuration to VotingConfiguration{XKbpzIF3TXah1X1JNsIAYQ}" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,882Z", "level": "INFO", "component": "o.e.c.s.MasterService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "elected-as-master ([1] nodes joined)[{ceeca20511f1}{XKbpzIF3TXah1X1JNsIAYQ}{bMcZEZawSM2C5I_foGJHnQ}{172.19.0.3}{172.19.0.3:9300}{dilm}{ml.machine_memory=2086154240, xpack.installed=true, ml.max_open_jobs=20} elect leader, _BECOME_MASTER_TASK_, _FINISH_ELECTION_], term: 1, version: 1, delta: master node changed {previous [], current [{ceeca20511f1}{XKbpzIF3TXah1X1JNsIAYQ}{bMcZEZawSM2C5I_foGJHnQ}{172.19.0.3}{172.19.0.3:9300}{dilm}{ml.machine_memory=2086154240, xpack.installed=true, ml.max_open_jobs=20}]}" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,951Z", "level": "INFO", "component": "o.e.c.c.CoordinationState", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "cluster UUID set to [ziBse8vDQFq3NdQ6z54p_w]" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:30,982Z", "level": "INFO", "component": "o.e.c.s.ClusterApplierService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "master node changed {previous [], current [{ceeca20511f1}{XKbpzIF3TXah1X1JNsIAYQ}{bMcZEZawSM2C5I_foGJHnQ}{172.19.0.3}{172.19.0.3:9300}{dilm}{ml.machine_memory=2086154240, xpack.installed=true, ml.max_open_jobs=20}]}, term: 1, version: 1, reason: Publication{term=1, version=1}" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,177Z", "level": "INFO", "component": "o.e.h.AbstractHttpServerTransport", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "publish_address {172.19.0.3:9200}, bound_addresses {0.0.0.0:9200}", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,178Z", "level": "INFO", "component": "o.e.n.Node", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "started", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| db | 2020-03-03 22:28:31.220 UTC [166] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| arches | operation: import_reference_data | |
| arches | Traceback (most recent call last): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | psycopg2.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| arches | | |
| arches | The above exception was the direct cause of the following exception: | |
| arches | | |
| arches | Traceback (most recent call last): | |
| arches | File "manage.py", line 27, in <module> | |
| arches | execute_from_command_line(sys.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 381, in execute_from_command_line | |
| arches | utility.execute() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 375, in execute | |
| arches | self.fetch_command(subcommand).run_from_argv(self.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 323, in run_from_argv | |
| arches | self.execute(*args, **cmd_options) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 364, in execute | |
| arches | output = self.handle(*args, **options) | |
| arches | File "/web_root/arches/arches/management/commands/packages.py", line 251, in handle | |
| arches | self.import_reference_data(options["source"], options["overwrite"], options["stage"], options["bulk_load"]) | |
| arches | File "/web_root/arches/arches/management/commands/packages.py", line 887, in import_reference_data | |
| arches | ret = skos.save_concepts_from_skos(rdf, overwrite, stage) | |
| arches | File "/web_root/arches/arches/app/utils/skos.py", line 80, in save_concepts_from_skos | |
| arches | skos_value_types_list = list(skos_value_types.values_list("valuetype", flat=True)) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/query.py", line 256, in __len__ | |
| arches | self._fetch_all() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/query.py", line 1242, in _fetch_all | |
| arches | self._result_cache = list(self._iterable_class(self)) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/query.py", line 182, in __iter__ | |
| arches | for row in compiler.results_iter(chunked_fetch=self.chunked_fetch, chunk_size=self.chunk_size): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/sql/compiler.py", line 1085, in results_iter | |
| arches | results = self.execute_sql(MULTI, chunked_fetch=chunked_fetch, chunk_size=chunk_size) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/sql/compiler.py", line 1131, in execute_sql | |
| arches | cursor = self.connection.cursor() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 256, in cursor | |
| arches | return self._cursor() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 233, in _cursor | |
| arches | self.ensure_connection() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/utils.py", line 89, in __exit__ | |
| arches | raise dj_exc_value.with_traceback(traceback) from exc_value | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | django.db.utils.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,316Z", "level": "INFO", "component": "o.e.g.GatewayService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "recovered [0] indices into cluster_state", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| db | 2020-03-03 22:28:31.734 UTC [167] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| arches | psql: error: could not connect to server: FATAL: database "archesdemo" does not exist | |
| arches | Running: python manage.py packages -o import_reference_data -s "arches/db/schemes/arches_concept_collections.rdf" | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,739Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.watches] for index patterns [.watches*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,834Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.watch-history-10] for index patterns [.watcher-history-10*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,930Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.triggered_watches] for index patterns [.triggered_watches*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:31,987Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.slm-history] for index patterns [.slm-history-1*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,046Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.monitoring-logstash] for index patterns [.monitoring-logstash-7-*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,141Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.monitoring-es] for index patterns [.monitoring-es-7-*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,227Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.monitoring-beats] for index patterns [.monitoring-beats-7-*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,305Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.monitoring-alerts-7] for index patterns [.monitoring-alerts-7]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,380Z", "level": "INFO", "component": "o.e.c.m.MetaDataIndexTemplateService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding template [.monitoring-kibana] for index patterns [.monitoring-kibana-7-*]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,456Z", "level": "INFO", "component": "o.e.a.s.m.TransportMasterNodeAction", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding index lifecycle policy [watch-history-ilm-policy]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,539Z", "level": "INFO", "component": "o.e.a.s.m.TransportMasterNodeAction", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "adding index lifecycle policy [slm-history-ilm-policy]", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,726Z", "level": "INFO", "component": "o.e.l.LicenseService", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "license [da78237d-6879-4770-93fb-25c881805f1d] mode [basic] - valid", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| elasticsearch | {"type": "server", "timestamp": "2020-03-03T22:28:32,728Z", "level": "INFO", "component": "o.e.x.s.s.SecurityStatusChangeListener", "cluster.name": "docker-cluster", "node.name": "ceeca20511f1", "message": "Active license is now [BASIC]; Security is disabled", "cluster.uuid": "ziBse8vDQFq3NdQ6z54p_w", "node.id": "XKbpzIF3TXah1X1JNsIAYQ" } | |
| db | 2020-03-03 22:28:34.991 UTC [168] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| arches | operation: import_reference_data | |
| arches | Traceback (most recent call last): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | psycopg2.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| arches | | |
| arches | The above exception was the direct cause of the following exception: | |
| arches | | |
| arches | Traceback (most recent call last): | |
| arches | File "manage.py", line 27, in <module> | |
| arches | execute_from_command_line(sys.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 381, in execute_from_command_line | |
| arches | utility.execute() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 375, in execute | |
| arches | self.fetch_command(subcommand).run_from_argv(self.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 323, in run_from_argv | |
| arches | self.execute(*args, **cmd_options) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 364, in execute | |
| arches | output = self.handle(*args, **options) | |
| arches | File "/web_root/arches/arches/management/commands/packages.py", line 251, in handle | |
| arches | self.import_reference_data(options["source"], options["overwrite"], options["stage"], options["bulk_load"]) | |
| arches | File "/web_root/arches/arches/management/commands/packages.py", line 887, in import_reference_data | |
| arches | ret = skos.save_concepts_from_skos(rdf, overwrite, stage) | |
| arches | File "/web_root/arches/arches/app/utils/skos.py", line 80, in save_concepts_from_skos | |
| arches | skos_value_types_list = list(skos_value_types.values_list("valuetype", flat=True)) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/query.py", line 256, in __len__ | |
| arches | self._fetch_all() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/query.py", line 1242, in _fetch_all | |
| arches | self._result_cache = list(self._iterable_class(self)) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/query.py", line 182, in __iter__ | |
| arches | for row in compiler.results_iter(chunked_fetch=self.chunked_fetch, chunk_size=self.chunk_size): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/sql/compiler.py", line 1085, in results_iter | |
| arches | results = self.execute_sql(MULTI, chunked_fetch=chunked_fetch, chunk_size=chunk_size) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/models/sql/compiler.py", line 1131, in execute_sql | |
| arches | cursor = self.connection.cursor() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 256, in cursor | |
| arches | return self._cursor() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 233, in _cursor | |
| arches | self.ensure_connection() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/utils.py", line 89, in __exit__ | |
| arches | raise dj_exc_value.with_traceback(traceback) from exc_value | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | django.db.utils.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| arches | | |
| arches | | |
| arches | ----- RUNNING DATABASE MIGRATIONS ----- | |
| arches | | |
| arches | ../entrypoint.sh: line 55: cd: /web_root/archesdemo: No such file or directory | |
| arches | Current work directory: /web_root/archesdemo | |
| db | 2020-03-03 22:28:36.519 UTC [169] postgres@archesdemo FATAL: database "archesdemo" does not exist | |
| arches | Traceback (most recent call last): | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | psycopg2.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| arches | | |
| arches | The above exception was the direct cause of the following exception: | |
| arches | | |
| arches | Traceback (most recent call last): | |
| arches | File "manage.py", line 27, in <module> | |
| arches | execute_from_command_line(sys.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 381, in execute_from_command_line | |
| arches | utility.execute() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/__init__.py", line 375, in execute | |
| arches | self.fetch_command(subcommand).run_from_argv(self.argv) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 323, in run_from_argv | |
| arches | self.execute(*args, **cmd_options) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 364, in execute | |
| arches | output = self.handle(*args, **options) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/base.py", line 83, in wrapped | |
| arches | res = handle_func(*args, **kwargs) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/commands/migrate.py", line 85, in handle | |
| arches | connection.prepare_database() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/contrib/gis/db/backends/postgis/base.py", line 25, in prepare_database | |
| arches | with self.cursor() as cursor: | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 256, in cursor | |
| arches | return self._cursor() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 233, in _cursor | |
| arches | self.ensure_connection() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/utils.py", line 89, in __exit__ | |
| arches | raise dj_exc_value.with_traceback(traceback) from exc_value | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 217, in ensure_connection | |
| arches | self.connect() | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/base/base.py", line 195, in connect | |
| arches | self.connection = self.get_new_connection(conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/db/backends/postgresql/base.py", line 178, in get_new_connection | |
| arches | connection = Database.connect(**conn_params) | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/psycopg2/__init__.py", line 126, in connect | |
| arches | conn = _connect(dsn, connection_factory=connection_factory, **kwasync) | |
| arches | django.db.utils.OperationalError: FATAL: database "archesdemo" does not exist | |
| arches | | |
| arches | Checking if Arches project archesdemo exists... | |
| arches | | |
| arches | ----- Custom Arches project 'archesdemo' does not exist. ----- | |
| arches | ----- Creating 'archesdemo'... ----- | |
| arches | | |
| arches | Current work directory: /web_root | |
| arches | Traceback (most recent call last): | |
| arches | File "/web_root/ENV/bin/arches-project", line 6, in <module> | |
| arches | exec(compile(open(__file__).read(), __file__, 'exec')) | |
| arches | File "/web_root/arches/arches/install/arches-project", line 150, in <module> | |
| arches | main() | |
| arches | File "/web_root/arches/arches/install/arches-project", line 143, in main | |
| arches | COMMANDS[args.command](args) | |
| arches | File "/web_root/arches/arches/install/arches-project", line 56, in command_create_app | |
| arches | cmd.handle(options) | |
| arches | File "/web_root/arches/arches/install/arches-project", line 33, in handle | |
| arches | self.validate_name(project_name, "project") | |
| arches | File "/web_root/ENV/lib/python3.8/site-packages/django/core/management/templates.py", line 228, in validate_name | |
| arches | raise CommandError( | |
| arches | django.core.management.base.CommandError: 'archesdemo' conflicts with the name of an existing Python module and cannot be used as a project name. Please try another name. | |
| arches | /web_root/arches/arches/install/arches-project:8: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses | |
| arches | import imp | |
| arches | Something went wrong when creating your Arches project: archesdemo. | |
| arches | Exiting... | |
| arches exited with code 1 |
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| version: '2' | |
| services: | |
| arches: | |
| container_name: arches | |
| image: getty/arches:5.0 | |
| build: | |
| context: . | |
| dockerfile: ./Dockerfile | |
| command: run_arches | |
| volumes: | |
| - arches-log:/arches/arches/logs | |
| - arches-static:/static_root | |
| environment: | |
| - ARCHES_PROJECT=archesdemo | |
| - INSTALL_DEFAULT_GRAPHS=True | |
| - INSTALL_DEFAULT_CONCEPTS=True | |
| - PGUSERNAME=postgres | |
| - PGPASSWORD=postgres | |
| - PGDBNAME=archesdemo | |
| - PGHOST=db | |
| - PGPORT=5432 | |
| - COUCHDB_HOST=couchdb | |
| - COUCHDB_PORT=5984 | |
| - COUCHDB_USER=admin | |
| - COUCHDB_PASS=password | |
| - ESHOST=elasticsearch | |
| - ESPORT=9200 | |
| - DJANGO_MODE=DEV | |
| - DJANGO_DEBUG=True | |
| # - DJANGO_REMOTE_DEBUG=False | |
| - DOMAIN_NAMES=localhost | |
| - PYTHONUNBUFFERED=0 | |
| - TZ=GMT | |
| ports: | |
| - '8000:8000' | |
| depends_on: | |
| - db | |
| - elasticsearch | |
| - couchdb | |
| nginx: | |
| container_name: nginx | |
| image: cvast/cvast-nginx:1.2.0 | |
| restart: unless-stopped | |
| ports: | |
| - '80:80' | |
| - '443:443' | |
| volumes: | |
| - arches-static:/www/static | |
| - letsencrypt-acme-challenge:/var/www | |
| - letsencrypt:/etc/letsencrypt | |
| environment: | |
| - NGINX_PROXY_MODE=local | |
| - NGINX_PROTOCOL=http | |
| - LOCAL_PROXY_HOST=arches | |
| - LOCAL_PROXY_PORT=8000 | |
| - DOMAIN_NAMES=localhost | |
| - PUBLIC_MODE=False | |
| - TZ=GMT | |
| depends_on: | |
| - arches | |
| db: | |
| container_name: db | |
| image: kartoza/postgis:12.0 | |
| volumes: | |
| - postgres-data:/var/lib/postgresql/data | |
| - postgres-log:/var/log/postgresql | |
| - ./arches/install/init-unix.sql:/docker-entrypoint-initdb.d/init.sql # to set up the DB template | |
| ports: | |
| - '5432:5432' | |
| environment: | |
| - POSTGRES_USER=postgres | |
| - POSTGRES_PASS=postgres | |
| - POSTGRES_DB=postgres | |
| - POSTGRES_MULTIPLE_EXTENSIONS=postgis,postgis_topology | |
| - TZ=GMT | |
| couchdb: | |
| container_name: couchdb | |
| image: couchdb:2.1.1 | |
| ports: | |
| - "5984:5984" | |
| environment: | |
| COUCHDB_USER: admin | |
| COUCHDB_PASSWORD: password | |
| volumes: | |
| - couchdb-data:/usr/local/var/lib/couchdb | |
| - couchdb-log:/usr/local/var/log/couchdb | |
| elasticsearch: | |
| container_name: elasticsearch | |
| image: elasticsearch:7.5.1 | |
| volumes: | |
| - elasticsearch-data:/usr/share/elasticsearch/data | |
| ports: | |
| - "9200:9200" | |
| - "9300:9300" | |
| environment: | |
| - TZ=GMT | |
| - discovery.type=single-node | |
| - discovery.seed_hosts= | |
| - "ES_JAVA_OPTS=-Xms400m -Xmx400m" | |
| letsencrypt: | |
| container_name: letsencrypt | |
| image: cvast/cvast-letsencrypt:1.1 | |
| volumes: | |
| - letsencrypt-acme-challenge:/var/www | |
| - letsencrypt:/etc/letsencrypt | |
| - letsencrypt-log:/var/log/letsencrypt | |
| command: get_certificate | |
| environment: | |
| - MODE=regular | |
| - LETSENCRYPT_EMAIL=info@example.com | |
| - DOMAIN_NAMES=localhost | |
| - PRODUCTION_MODE=False | |
| - PERSISTENT_MODE=True | |
| - TZ=GMT | |
| volumes: | |
| arches-log: | |
| arches-static: | |
| couchdb-data: | |
| couchdb-log: | |
| postgres-data: | |
| postgres-log: | |
| elasticsearch-data: | |
| letsencrypt: | |
| letsencrypt-log: | |
| letsencrypt-acme-challenge: |
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Here, I'm trying to create an Arches 5.0 installation in Docker, following the instructions at https://github.com/archesproject/arches/blob/master/docker/Readme.md, as far as step 6 under Quick Start, docker-compose up, using the modified docker-compose.yml included in this gist.