"setup.nix" packaging example

python-packages.nix

# Generated by pip2nix 0.8.0.dev1
# See https://github.com/nix-community/pip2nix

{ pkgs, fetchurl, fetchgit, fetchhg }:

self: super: {
  "Babel" = super.buildPythonPackage rec {
    pname = "Babel";
    version = "2.9.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/dd/a5/81076e10b5ef74493cf08a8e419e61b64324c9c55db4aa7f89c0240c4873/Babel-2.9.0-py2.py3-none-any.whl";
      sha256 = "19bgr836r2ih484vl2slkkqz7v71rmb4mb45rhz3r2brrhpw4dcx";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."pytz"
    ];
  };
  "PyICU" = super.buildPythonPackage rec {
    pname = "PyICU";
    version = "2.7.2";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/17/0f/9d6b7eb01650960239a5d4dc21cd6e7a96921807c043d287bae4b2f440e1/PyICU-2.7.2.tar.gz";
      sha256 = "1p7906d86iwpl0v01zq7j16v96cigpx2bdgrfj9cj76r4adqd0hk";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "agate" = super.buildPythonPackage rec {
    pname = "agate";
    version = "1.6.2";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/da/ec/73bf438732d6e38b380fab9e4dcdfa2b227a984e50c3b56cc9a128fbae9b/agate-1.6.2.tar.gz";
      sha256 = "1vcr8d66vnbrih6bq7y8lyl15gn47sczb7hhv2iczzngl9blmgcd";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."Babel"
      self."PyICU"
      self."isodate"
      self."leather"
      self."parsedatetime"
      self."python-slugify"
      self."pytimeparse"
      self."six"
    ];
  };
  "agate-dbf" = super.buildPythonPackage rec {
    pname = "agate-dbf";
    version = "0.2.2";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/54/70/a32dfaa47cb7b4e4d70aff67d89c32984085b946442d26a9d9fca7d96d8b/agate-dbf-0.2.2.tar.gz";
      sha256 = "0ywiy71482xvjs4293hirlv77ysrnvny7rhihpfg40swijvq55jq";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."agate"
      self."dbfread"
    ];
  };
  "agate-excel" = super.buildPythonPackage rec {
    pname = "agate-excel";
    version = "0.2.3";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/a9/cd/ba7ce638900a91f00e6ebaa72c46fc90bfc13cb595071cee82c96057d5d6/agate-excel-0.2.3.tar.gz";
      sha256 = "0lkxl5hv8s9hdylawwy7v21by24fdkc1v7h469qnnhvwr3r5w9cg";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."agate"
      self."openpyxl"
      self."xlrd"
    ];
  };
  "agate-sql" = super.buildPythonPackage rec {
    pname = "agate-sql";
    version = "0.5.6";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/f2/97/261281b84bbb35502d29e39da2f1f0ee3d5d08bd982e48fcb8294b69a0e7/agate-sql-0.5.6.tar.gz";
      sha256 = "1pnw2qc6imm6l0da7swxq4i7ds2y79wz8l4r3hzxzpzvhzjwjv85";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."agate"
      self."sqlalchemy"
    ];
  };
  "aiohttp" = super.buildPythonPackage rec {
    pname = "aiohttp";
    version = "3.7.4.post0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/99/f5/90ede947a3ce2d6de1614799f5fea4e93c19b6520a59dc5d2f64123b032f/aiohttp-3.7.4.post0.tar.gz";
      sha256 = "1kzyg94qi264rpzxs4a9x2lg3amvrz6yl6cqdg3agxg5xfck4ga9";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."async-timeout"
      self."attrs"
      self."chardet"
      self."multidict"
      self."typing-extensions"
      self."yarl"
    ];
  };
  "appdirs" = super.buildPythonPackage rec {
    pname = "appdirs";
    version = "1.4.4";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/3b/00/2344469e2084fb287c2e0b57b72910309874c3245463acd6cf5e3db69324/appdirs-1.4.4-py2.py3-none-any.whl";
      sha256 = "0a5ib82s2335nhvq5rjh8hkimrwyw43xnshn3ds8lccrdg6xlhd8";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "astroid" = super.buildPythonPackage rec {
    pname = "astroid";
    version = "2.5.3";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/03/e3/9f9c3ad230d706dbf2d0314f5cff92f6d3cc7d65226af2854ea59d000c43/astroid-2.5.3-py3-none-any.whl";
      sha256 = "1mc0417xj5spxbi85bchphff23623dci4723b0gmif7vk4kz78xy";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."lazy-object-proxy"
      self."wrapt"
    ];
  };
  "async-timeout" = super.buildPythonPackage rec {
    pname = "async-timeout";
    version = "3.0.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/e1/1e/5a4441be21b0726c4464f3f23c8b19628372f606755a9d2e46c187e65ec4/async_timeout-3.0.1-py3-none-any.whl";
      sha256 = "18wy5w0wk37ikx9n5yc8s9746bgqz3wdddbc1d6jfz98glcwm4a2";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "attrs" = super.buildPythonPackage rec {
    pname = "attrs";
    version = "20.3.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/c3/aa/cb45262569fcc047bf070b5de61813724d6726db83259222cd7b4c79821a/attrs-20.3.0-py2.py3-none-any.whl";
      sha256 = "1rn756ly60sg7byp6caiz5ydczk14jkpd77a58y45a1ac3nyrcii";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "biopython" = super.buildPythonPackage rec {
    pname = "biopython";
    version = "1.78";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/89/c5/7fe326081276f74a4073f6d6b13cfa7a04ba322a3ff1d84027f4773980b8/biopython-1.78.tar.gz";
      sha256 = "0r25ps5pmbwbiban4jhhvxrzs6d4pa050bb4lvz80ripqava1q0y";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."numpy"
    ];
  };
  "black" = super.buildPythonPackage rec {
    pname = "black";
    version = "20.8b1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/dc/7b/5a6bbe89de849f28d7c109f5ea87b65afa5124ad615f3419e71beb29dc96/black-20.8b1.tar.gz";
      sha256 = "1spv6sldp3mcxr740dh3ywp25lly9s8qlvs946fin44rl1x5a0hw";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [
      self."setuptools"
      self."setuptools-scm"
      self."wheel"
    ];
    propagatedBuildInputs = [
      self."appdirs"
      self."click"
      self."mypy-extensions"
      self."pathspec"
      self."regex"
      self."toml"
      self."typed-ast"
      self."typing-extensions"
    ];
  };
  "bottleneck" = super.buildPythonPackage rec {
    pname = "bottleneck";
    version = "1.3.2";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/5b/08/278c6ee569458e168096f6b51019cc1c81c288da3d1026a22ee2ccead102/Bottleneck-1.3.2.tar.gz";
      sha256 = "0wz5320jx3n4q2nsvwvc7cpi66b46qbals9v53m955rmcq5ry5r0";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [
      self."setuptools"
      self."wheel"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
      self."numpy"
    ];
    propagatedBuildInputs = [
      self."numpy"
    ];
  };
  "certifi" = super.buildPythonPackage rec {
    pname = "certifi";
    version = "2020.12.5";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/5e/a0/5f06e1e1d463903cf0c0eebeb751791119ed7a4b3737fdc9a77f1cdfb51f/certifi-2020.12.5-py2.py3-none-any.whl";
      sha256 = "0c4qsp7q10hhiryvl6dyxsfh9r1mpja8sfkzri2bvf9kkvxp96ki";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "chardet" = super.buildPythonPackage rec {
    pname = "chardet";
    version = "4.0.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/19/c7/fa589626997dd07bd87d9269342ccb74b1720384a4d739a1872bd84fbe68/chardet-4.0.0-py2.py3-none-any.whl";
      sha256 = "198xs99vbvcj312d1bk7bgn7aix5h64sqi3hwvr1i4gxcr6har7q";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "click" = super.buildPythonPackage rec {
    pname = "click";
    version = "7.1.2";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/d2/3d/fa76db83bf75c4f8d338c2fd15c8d33fdd7ad23a9b5e57eb6c5de26b430e/click-7.1.2-py2.py3-none-any.whl";
      sha256 = "1p607168jqq20d8bngrkfqv0vvkfas57r6s8szimvpgs9fgsik6s";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "colorama" = super.buildPythonPackage rec {
    pname = "colorama";
    version = "0.4.4";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/44/98/5b86278fbbf250d239ae0ecb724f8572af1c91f4a11edf4d36a206189440/colorama-0.4.4-py2.py3-none-any.whl";
      sha256 = "1qn3bnyd7gdwkyk8nvlhiy3c6zbwjd49fjxj0gp8xxi9faiysiwz";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "commonmark" = super.buildPythonPackage rec {
    pname = "commonmark";
    version = "0.9.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/b1/92/dfd892312d822f36c55366118b95d914e5f16de11044a27cf10a7d71bbbf/commonmark-0.9.1-py2.py3-none-any.whl";
      sha256 = "1nbgsvb73ad93cjzjdggkpp4zizvxay3q6ms23j3vy4h4p4khbys";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "csvchk" = super.buildPythonPackage rec {
    pname = "csvchk";
    version = "0.1.8";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/81/13/d75764e07e49a6b0d99a50ac3f59842b8c4b2ccf7249f8324901ca07e3d5/csvchk-0.1.8-py3-none-any.whl";
      sha256 = "1cl3b0ddrc6ryx0d29aca9qxx27wzpjhyif2vdjbl2g157zxigyh";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "csvkit" = super.buildPythonPackage rec {
    pname = "csvkit";
    version = "1.0.5";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/95/c9/8dd118c0ea0114125a8bf50d552626b95f6478bcf29a252296e93d778855/csvkit-1.0.5.tar.gz";
      sha256 = "1ffmbzk4rxnl1yhqfl58v7kvl5m9cbvjm8v7xp4mvr00sgs91lvv";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."agate"
      self."agate-dbf"
      self."agate-excel"
      self."agate-sql"
      self."six"
    ];
  };
  "dbfread" = super.buildPythonPackage rec {
    pname = "dbfread";
    version = "2.0.7";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/4c/94/51349e43503e30ed7b4ecfe68a8809cdb58f722c0feb79d18b1f1e36fe74/dbfread-2.0.7-py2.py3-none-any.whl";
      sha256 = "1v2cr1i73bvdsi3nmfyjg1r4d56mp38fayqd2sh4ysariksxw17n";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "et-xmlfile" = super.buildPythonPackage rec {
    pname = "et-xmlfile";
    version = "1.0.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/22/28/a99c42aea746e18382ad9fb36f64c1c1f04216f41797f2f0fa567da11388/et_xmlfile-1.0.1.tar.gz";
      sha256 = "0nrkhcb6jdrlb6pwkvd4rycw34y3s931hjf409ij9xkjsli9fkb1";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "filelock" = super.buildPythonPackage rec {
    pname = "filelock";
    version = "3.0.12";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/93/83/71a2ee6158bb9f39a90c0dea1637f81d5eef866e188e1971a1b1ab01a35a/filelock-3.0.12-py3-none-any.whl";
      sha256 = "0djqy7z7kf591nqz3kj7ayvp0gqb0d7c2npsn1qnnzavxiipv6wj";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "flake8" = super.buildPythonPackage rec {
    pname = "flake8";
    version = "3.9.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/a0/b0/3b5820728d687f2c000476216a3fccc7a03baac1034afc0284ccde25e26d/flake8-3.9.1-py2.py3-none-any.whl";
      sha256 = "0aldfbm4n5b7m2ywdlhlzqxhf3q1fp59i077bdiwzp6xaa4q97rv";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."mccabe"
      self."pycodestyle"
      self."pyflakes"
    ];
  };
  "graphviz" = super.buildPythonPackage rec {
    pname = "graphviz";
    version = "0.16";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/86/86/89ba50ba65928001d3161f23bfa03945ed18ea13a1d1d44a772ff1fa4e7a/graphviz-0.16-py2.py3-none-any.whl";
      sha256 = "1srr2vfb0yql8qd0m2720dvxjqnyawm41xlxczy0s2b1r4bmbb9w";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "greenlet" = super.buildPythonPackage rec {
    pname = "greenlet";
    version = "1.0.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/92/be/878cc5314fa5aadce33e68738c1a24debe317605196bdfc2049e66bc9c30/greenlet-1.0.0.tar.gz";
      sha256 = "1y6wbg9yhm9dw6m768n4yslp56h85pnxkk3drz6icn15g6f1d7ki";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "idna" = super.buildPythonPackage rec {
    pname = "idna";
    version = "2.10";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/a2/38/928ddce2273eaa564f6f50de919327bf3a00f091b5baba8dfa9460f3a8a8/idna-2.10-py2.py3-none-any.whl";
      sha256 = "1h280sli58v5dapmf79rnnqdrrk0xjn8vi3pxppknllv3r5q0zdr";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "iniconfig" = super.buildPythonPackage rec {
    pname = "iniconfig";
    version = "1.1.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/9b/dd/b3c12c6d707058fa947864b67f0c4e0c39ef8610988d7baea9578f3c48f3/iniconfig-1.1.1-py2.py3-none-any.whl";
      sha256 = "1cx8kpp3akxwadzsmv2cdnifkyzj8fki5frmv3mzcivz9g3287h1";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "isodate" = super.buildPythonPackage rec {
    pname = "isodate";
    version = "0.6.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/9b/9f/b36f7774ff5ea8e428fdcfc4bb332c39ee5b9362ddd3d40d9516a55221b2/isodate-0.6.0-py2.py3-none-any.whl";
      sha256 = "109cfyn25wyn4ac0h4nc6xrv9cwazldbir4nr8m3bxa0cv036kda";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."six"
    ];
  };
  "isort" = super.buildPythonPackage rec {
    pname = "isort";
    version = "5.8.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/d9/47/0ec3ec948b7b3a0ba44e62adede4dca8b5985ba6aaee59998bed0916bd17/isort-5.8.0-py3-none-any.whl";
      sha256 = "0pb5dniglf91zs3nqa9qw829z64sl15ivknv8jckq7i1ml56ic9b";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "iteration-utilities" = super.buildPythonPackage rec {
    pname = "iteration-utilities";
    version = "0.11.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/0d/27/88eed2efe269faa330f702c02a7b8c98076db9551a8c2e931348b0f78077/iteration_utilities-0.11.0.tar.gz";
      sha256 = "0xra9i9m99b37fa7ggnr0nryaviv0gwzsq2lzx07x6lyaji427zr";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "lazy-object-proxy" = super.buildPythonPackage rec {
    pname = "lazy-object-proxy";
    version = "1.6.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/bb/f5/646893a04dcf10d4acddb61c632fd53abb3e942e791317dcdd57f5800108/lazy-object-proxy-1.6.0.tar.gz";
      sha256 = "09lp6xf2z9ixjrh0di5c3xnkr89agx4sdyw2z7372x9pd39h1428";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
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    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."setuptools"
    ];
  };
  "six" = super.buildPythonPackage rec {
    pname = "six";
    version = "1.15.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/ee/ff/48bde5c0f013094d729fe4b0316ba2a24774b3ff1c52d924a8a4cb04078a/six-1.15.0-py2.py3-none-any.whl";
      sha256 = "1vaw9aqdsbg84s20yqmg24k5kcq65dpxg4bldpzkijmspgfbwx4b";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "sqlalchemy" = super.buildPythonPackage rec {
    pname = "sqlalchemy";
    version = "1.4.9";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/29/25/1fbcbf47928731ff46cbf3eaaaacbdcc042dd85f919580055f30a0dbdb0a/SQLAlchemy-1.4.9.tar.gz";
      sha256 = "1b3ddfs84c3aylkn9hic0xx1hnfv4d7rm9ij549ykyvp4sbmf5zk";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."greenlet"
    ];
  };
  "tabulate" = super.buildPythonPackage rec {
    pname = "tabulate";
    version = "0.8.9";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/ca/80/7c0cad11bd99985cfe7c09427ee0b4f9bd6b048bd13d4ffb32c6db237dfb/tabulate-0.8.9-py3-none-any.whl";
      sha256 = "1r27bp985x3c5iiccq6wz1agwclgby2gl42f768y9idvgbz17h6p";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "text-unidecode" = super.buildPythonPackage rec {
    pname = "text-unidecode";
    version = "1.3";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/a6/a5/c0b6468d3824fe3fde30dbb5e1f687b291608f9473681bbf7dabbf5a87d7/text_unidecode-1.3-py2.py3-none-any.whl";
      sha256 = "1s12m0s73djhjcc1i2w8hx94ak2glqmiqwr32qj3anc9ic7g248k";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "toml" = super.buildPythonPackage rec {
    pname = "toml";
    version = "0.10.2";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/44/6f/7120676b6d73228c96e17f1f794d8ab046fc910d781c8d151120c3f1569e/toml-0.10.2-py2.py3-none-any.whl";
      sha256 = "16sgpg57kxx5jh467d9qwc2hwshfvdbl0xkafdp3qspvbfp46qc0";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "typed-ast" = super.buildPythonPackage rec {
    pname = "typed-ast";
    version = "1.4.3";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/6e/08/c04a49ee26a94c1ec211e7b1e5f2971d692e04818ea67ef70f1e879cf525/typed_ast-1.4.3.tar.gz";
      sha256 = "0rgcynvicc614fyzq1bdq9c864wrkhwq21ypxnfa5pish2nbw6zv";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "typing-extensions" = super.buildPythonPackage rec {
    pname = "typing-extensions";
    version = "3.7.4.3";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/60/7a/e881b5abb54db0e6e671ab088d079c57ce54e8a01a3ca443f561ccadb37e/typing_extensions-3.7.4.3-py3-none-any.whl";
      sha256 = "060rhhpnprx5893zdcna7y7rvriqi1i82y1yrg1vzxq01w10gd3w";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "urllib3" = super.buildPythonPackage rec {
    pname = "urllib3";
    version = "1.26.4";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/09/c6/d3e3abe5b4f4f16cf0dfc9240ab7ce10c2baa0e268989a4e3ec19e90c84e/urllib3-1.26.4-py2.py3-none-any.whl";
      sha256 = "1pxhnlgf548k2cs44bnld89nqknz3xaipfs4m48f3qdp9mcs8k9g";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "wrapt" = super.buildPythonPackage rec {
    pname = "wrapt";
    version = "1.12.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/82/f7/e43cefbe88c5fd371f4cf0cf5eb3feccd07515af9fd6cf7dbf1d1793a797/wrapt-1.12.1.tar.gz";
      sha256 = "1mwpkdnqxf0yxj1a0hsnl06lf287qi5ap7309wm37x45zf0zlbxn";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "xlrd" = super.buildPythonPackage rec {
    pname = "xlrd";
    version = "2.0.1";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/a6/0c/c2a72d51fe56e08a08acc85d13013558a2d793028ae7385448a6ccdfae64/xlrd-2.0.1-py2.py3-none-any.whl";
      sha256 = "1pdvy31hclmq8ddj12kbcdwjckp79glzcac12p0spnbvhy4ywcva";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "yapf" = super.buildPythonPackage rec {
    pname = "yapf";
    version = "0.31.0";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/5f/0d/8814e79eb865eab42d95023b58b650d01dec6f8ea87fc9260978b1bf2167/yapf-0.31.0-py2.py3-none-any.whl";
      sha256 = "0blwvmw0j0n7pady6qdn32d0i46mfb4dm734m8g21zjmhjx398p3";
    };
    format = "wheel";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [];
  };
  "yarl" = super.buildPythonPackage rec {
    pname = "yarl";
    version = "1.6.3";
    src = fetchurl {
      url = "https://files.pythonhosted.org/packages/97/e7/af7219a0fe240e8ef6bb555341a63c43045c21ab0392b4435e754b716fa1/yarl-1.6.3.tar.gz";
      sha256 = "045z4ssg8g5h0qhz8hnx74hswgkndaldqq1xi5l1n5s0j996d44a";
    };
    format = "setuptools";
    doCheck = false;
    buildInputs = [];
    checkInputs = [];
    nativeBuildInputs = [];
    propagatedBuildInputs = [
      self."idna"
      self."multidict"
    ];
  };
}

requirements.txt

biopython
black
csvkit
csvchk
flake8
graphviz
iteration_utilities
mypy
new-py
pandas
pylint
pytest
pytest-flake8
pytest-mypy
pytest-pylint
requests
rich
tabulate
yapf
seqmagick

# required with setup.nix approach to cope with implicit dependencies from nixpkgs

aiohttp
bottleneck
setuptools-scm==5.0.2

setup.nix

{ pkgs ? import (fetchTarball {  # NixOS 20.09
    url = "https://github.com/NixOS/nixpkgs/archive/cd63096d6d887d689543a0b97743d28995bc9bc3.tar.gz";
    sha256 = "1wg61h4gndm3vcprdcg7rc4s1v3jkm5xd7lw8r2f67w502y94gcy";
  }) { config = { allowBroken = true; }; }
, python ? "python38"
, pythonPackages ? builtins.getAttr (python + "Packages") pkgs
, requirements ?  ./. + "/python-packages.nix"
}:

with builtins;
with pkgs;
with pkgs.lib;

let

  # Load generated requirements
  requirementsFunc = import requirements {
    inherit pkgs;
    inherit (builtins) fetchurl;
    inherit (pkgs) fetchgit fetchhg;
  };

  # List package names in requirements
  requirementsNames = attrNames (requirementsFunc {} {});

  # Return base name from python drv name or name when not python drv
  pythonNameOrName = drv:
    if hasAttr "overridePythonAttrs" drv then drv.pname else drv.name;

  # Merge named input list from nixpkgs drv with input list from requirements drv
  mergedInputs = old: new: inputsName: self: super:
    (attrByPath [ inputsName ] [] new) ++ map
    (x: attrByPath [ (pythonNameOrName x) ] x self)
    (filter (x: !isNull x) (attrByPath [ inputsName ] [] old));

  # Merge package drv from nixpkgs drv with requirements drv
  mergedPackage = old: new: self: super:
    if isString new.src
       && !isNull (match ".*\.whl" new.src)  # do not merge build inputs for wheels
       && new.pname != "wheel"               # ...
    then new.overridePythonAttrs(old: rec {
      propagatedBuildInputs =
        mergedInputs old new "propagatedBuildInputs" self super;
    })
    else old.overridePythonAttrs(old: rec {
      inherit (new) pname version src;
      name = "${pname}-${version}";
      checkInputs =
        mergedInputs old new "checkInputs" self super;
      buildInputs =
        mergedInputs old new "buildInputs" self super;
      nativeBuildInputs =
        mergedInputs old new "nativeBuildInputs" self super;
      propagatedBuildInputs =
        mergedInputs old new "propagatedBuildInputs" self super;
      doCheck = false;
    });

  # Build python with manual aliases for naming differences between world and nix
  buildPython = (pythonPackages.python.override {
    packageOverrides = self: super:
      listToAttrs (map (name: {
        name = name; value = getAttr (getAttr name aliases) super;
      }) (filter (x: hasAttr (getAttr x aliases) super) (attrNames aliases)));
  });

  # Build target python with all generated & customized requirements
  targetPython = (buildPython.override {
    packageOverrides = self: super:
      # 1) Merge packages already in pythonPackages
      let super_ = (requirementsFunc self buildPython.pkgs);  # from requirements
          results = (listToAttrs (map (name: let new = getAttr name super_; in {
        inherit name;
        value = mergedPackage (getAttr name buildPython.pkgs) new self super_;
      })
      (filter (name: hasAttr "overridePythonAttrs"
                     (if (tryEval (attrByPath [ name ] {} buildPython.pkgs)).success
                      then (attrByPath [ name ] {} buildPython.pkgs) else {}))
       requirementsNames)))
      // # 2) with packages only in requirements or disabled in nixpkgs
      (listToAttrs (map (name: { inherit name; value = (getAttr name super_); })
      (filter (name: (! ((hasAttr name buildPython.pkgs) &&
                         (tryEval (getAttr name buildPython.pkgs)).success)))
       requirementsNames)));
      in # 3) finally, apply overrides (with aliased drvs mapped back)
      (let final = (super // (results //
        (listToAttrs (map (name: {
          name = getAttr name aliases; value = getAttr name results;
        }) (filter (x: hasAttr x results) (attrNames aliases))))
      )); in (final // (overrides self final)));
    self = buildPython;
  });

  # Helper to always return a list
  asList = name: attrs:
    if hasAttr name attrs then
      let candidate = getAttr name attrs; in
      if isList candidate then candidate else []
    else [];

  # Alias packages with different names in requirements and in nixpkgs
  aliases = {
    "bottleneck" = "Bottleneck";
    "sqlalchemy" = "SQLAlchemy";
    "typing-extensions" = "typing_extensions";
    "setuptools-scm" = "setuptools_scm";
  };

  # Final overrides to fix issues all the magic above cannot fix automatically
  overrides = self: super: {
    "cryptography" = super."cryptography".overridePythonAttrs(old: {
      doCheck = false;
    });
    "PyICU" = super."PyICU".overridePythonAttrs(old: {
      patches = [];
    });
    "sphinx" = super."sphinx".overridePythonAttrs(old: {
      propagatedBuildInputs = old.propagatedBuildInputs ++ [ self.packaging ];
    });
    "new-py" = super."new-py".overridePythonAttrs(old: {
      postInstall = ''
        rm $out/${self.python.sitePackages}/__init__.py
        rm $out/${self.python.sitePackages}/__pycache__/__init__.cpython-38.pyc
      '';
    });
  };

in rec {

  inherit buildPython targetPython;

  python = targetPython.withPackages(ps: map (name: getAttr name ps) requirementsNames);

  env = pkgs.buildEnv {
    name = "env";
    paths = [
      python
    ];
  };

  shell = pkgs.mkShell {
    buildInputs = [
      python
    ];
  };

}

shell.nix

{ pkgs ? import <nixpkgs> {}
}:

pkgs.mkShell {
  buildInputs = [
    (import ./setup.nix {}).python
  ];
}