Created
July 31, 2021 01:41
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A script that prints the series IDs (and optionally the entire metadata dictionary) of DICOM images.
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#! /usr/bin/env python | |
import sys, getopt | |
# By default, this script prints out the seriesID of any dicom | |
# images. With the Verbose flag, it prints out the whole metadata | |
# dictionary. | |
seriesID = False | |
verbose = 0 | |
def usage(): | |
print ("") | |
print ("dicomdump.py: [options] dicom_image") | |
print ("") | |
print (" -h, --help This help message") | |
print (" -v, --verbose Increase verbosity level") | |
print (" -s, --series Print series ID") | |
try: | |
opts, args= getopt.getopt( sys.argv[1:], "vhs", | |
[ "verbose", "help", "series" ] ) | |
except getopt.GetoptErr as err: | |
print (str(err)) | |
usage() | |
sys.exit(1) | |
for o, a in opts: | |
if o in ("-v", "--verbose"): | |
verbose = verbose + 1 | |
elif o in ("-h", "--help"): | |
usage() | |
sys.exit() | |
elif o in ("-s", "--series"): | |
seriesID = True | |
else: | |
assert False, "unhandled options" | |
import SimpleITK as sitk | |
def dump_dicomstuff(fname): | |
print ("\nFile:", fname) | |
img = sitk.ReadImage(fname) | |
if verbose>1: | |
print (img) | |
keys = img.GetMetaDataKeys() | |
#if verbose: | |
# print (keys) | |
for k in keys: | |
v = img.GetMetaData(k) | |
if verbose: | |
print (k, ": ", v) | |
elif seriesID and (k in ("0020|000e")): | |
print (k, ": ", v) | |
for fname in args: | |
dump_dicomstuff(fname) |
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