mfansler

#!/bin/bash                                                                                                                                    

if [ "$#" -ne 1 ]; then
  echo -e "Incorrect number of parameters! Usage:\n    index-gtf.sh <file.gtf(.gz)>" >&2
  exit 1
fi

gtf="$1"

if [[ $gtf =~ \.gz$ ]]; then

discdiver

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• Shift + Enter run selected cell or cells - if no cells below, insert a code cell below

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• Ctrl + S save and checkpoint

• Ctrl + Shift + S save as

m-radzikowski

#!/usr/bin/env bash

set -Eeuo pipefail
trap cleanup SIGINT SIGTERM ERR EXIT

script_dir=$(cd "$(dirname "${BASH_SOURCE[0]}")" &>/dev/null && pwd -P)

usage() {
  cat <<EOF
Usage: $(basename "${BASH_SOURCE[0]}") [-h] [-v] [-f] -p param_value arg1 [arg2...]