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@arq5x
arq5x / cadd_compress.sh
Last active March 30, 2017 09:09
Various attempts at compressing the raw CADD datasets for use with GEMINI (and by others).
# Download the raw CADD TSV and Tabix index (no annotations, just scores)
wget http://krishna.gs.washington.edu/download/CADD/v1.0/whole_genome_SNVs.tsv.gz
wget http://krishna.gs.washington.edu/download/CADD/v1.0/whole_genome_SNVs.tsv.gz.tbi
# it is big. 79Gb
ls -ltrh whole_genome_SNVs.tsv.gz
-rw-r--r-- 1 arq5x users 79G Sep 26 01:44 whole_genome_SNVs.tsv.gz
# for testing, let's play with the chr22 intervals
tabix whole_genome_SNVs.tsv.gz 22 | bgzip > whole_genome_SNVs.tsv.22.gz
@richardcornish
richardcornish / git.md
Last active August 11, 2023 08:44
Enough Git for your résumé in 100ish lines
@jimbojsb
jimbojsb / gist:1630790
Created January 18, 2012 03:52
Code highlighting for Keynote presentations

Step 0:

Get Homebrew installed on your mac if you don't already have it

Step 1:

Install highlight. "brew install highlight". (This brings down Lua and Boost as well)

Step 2: