david-a-parry

#!/usr/bin/env python3
from collections import OrderedDict
import os
import requests
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns

URL = 'https://portals.broadinstitute.org/collaboration/giant/images/8/80/Height_AA_add_SV.txt.gz'

david-a-parry

#!/usr/bin/env python3
import os
import warnings
import re
import pandas as pd

date_re = re.compile(r'\d{4}-\d{2}-\d{2}')
mnth2str = {3: 'MARCH', 9: 'SEPT', 10: 'OCT', 12: 'DEC'}

david-a-parry

import seaborn as sns
from pandas.api.types import is_float_dtype, is_integer_dtype
import matplotlib.pyplot as plt
%matplotlib inline


def add_quantile_lines(df, ax, x, y, median_width=0.4, quantile_width=0.25,
                       mean_and_sd=False, mean_and_sem=False, color='k',
                       line_width=3, alpha=0.8, zorder=9):
    if mean_and_sd and mean_and_sem:

david-a-parry

#!/bin/sh

#software
VCFHACKS=~/bin/vcfhacks/
# EXPRESSION=~/projects/bridge_study/vcfs/work/expression.py
CSQ_QUERY=~/projects/bridge_study/vcfs/work/csq_query.py

# dirs
WORK=~/projects/bridge_study/vcfs/work/
AITMAN=${WORK}/aitman/