Exemplo : http://jsfiddle.net/729z9/

salvar.php

<?php 

	if($_SERVER['REQUEST_METHOD'] == 'POST'){	

		//Instancia a classe PDO

		$pdo = new PDO("mysql:host=localhost;dbname=exemplo", "root", "");

		//Recupera o nome da empresa
		$company = filter_input(INPUT_POST, 'company', FILTER_SANITIZE_ENCODED);


		$stmt = $pdo->prepare("INSERT INTO company (nameCompany, createdCompany) VALUES (:name, NOW())");
		$stmt->bindValue(':name', $company);
		$stmt->execute();

		//recuperar o ultimo ID
		$idCompany = $pdo->lastInsertId();

		//recupera

		$names = filter_input(INPUT_POST, 'name', FILTER_SANITIZE_ENCODED);
		$phones = filter_input(INPUT_POST, 'phone', FILTER_SANITIZE_ENCODED);

		//Verificar se os valores o nome e telefone existe
		if($names  && $phones){
			//Percorre o array dos nomes
			foreach($names as $i => $name){
				
				$stmt = $pdo->prepare("INSERT INTO employee (nameEmployee, phoneEmployee) VALUES (:name,:phone)");
				$stmt->bindValue(':name', $name);
				$stmt->bindValue(':phone', $phones[$i]);
				$stmt->execute();
			}
		}

	}