cauldron docker file

cauldron docker file

# Use miniconda3 as base image
FROM continuumio/miniconda3:23.3.1-0

#update base
RUN apt-get update && apt-get install -y zlib1g-dev zlib1g libbz2-dev liblzma-dev wget libncurses5-dev

# Put conda in path so we can use conda activate
ENV PATH=$CONDA_DIR/bin:$PATH

# Update conda to latest version.
RUN conda update -n base -c defaults conda
RUN conda install -n base -c conda-forge mamba

# Install snakemake
#RUN conda install -c bioconda snakemake
RUN mamba install -c conda-forge -c bioconda snakemake

# Install some utilities
RUN apt-get install -y unzip rsync