davipatti

1 warning generated.
mv -f .deps/tinyxmlparser.Tpo .deps/tinyxmlparser.Plo
/bin/sh ../../libtool --tag=CXX   --mode=link g++  -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fno-common -DHAVE_ZLIB  -framework Accelerate -static  -o libtinyxml.la -rpath /Users/david/amber12/lib tinyxml.lo tinyxmlerror.lo tinystr.lo tinyxmlparser.lo  -lz 
libtool: link: ar cru .libs/libtinyxml.a  tinyxml.o tinyxmlerror.o tinystr.o tinyxmlparser.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libtinyxml.a(tinystr.o) has no symbols
libtool: link: ranlib .libs/libtinyxml.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libtinyxml.a(tinystr.o) has no symbols
libtool: link: ( cd ".libs" && rm -f "libtinyxml.la" && ln -s "../libtinyxml.la" "libtinyxml.la" )
Making all in Log
/bin/sh ../../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/Users/david/amber12/AmberTools/src/boost-1.38.

davipatti

dhcp-172-17-187-12:Andante david$ make
gcc   -I.  -I../../lm  -I../liborc   -c -o alloc_structures.o alloc_structures.c
gcc   -I.  -I../../lm  -I../liborc   -c -o andante.o andante.c
gcc   -I.  -I../../lm  -I../liborc   -c -o assign_radii.o assign_radii.c
gcc   -I.  -I../../lm  -I../liborc   -c -o borrow_chi.o borrow_chi.c
gcc   -I.  -I../../lm  -I../liborc   -c -o build_stuff.o build_stuff.c
gcc   -I.  -I../../lm  -I../liborc   -c -o check_rotamers.o check_rotamers.c
gcc   -I.  -I../../lm  -I../liborc   -c -o combo_utility.o combo_utility.c
gcc   -I.  -I../../lm  -I../liborc   -c -o create_rotamer_library.o create_rotamer_library.c
gcc   -I.  -I../../lm  -I../liborc   -c -o d5_util1.o d5_util1.c

davipatti

dhcp-172-17-187-12:Andante david$ make
gcc   -I.  -I../../lm  -I../liborc   -c -o alloc_structures.o alloc_structures.c
gcc   -I.  -I../../lm  -I../liborc   -c -o andante.o andante.c
gcc   -I.  -I../../lm  -I../liborc   -c -o assign_radii.o assign_radii.c
gcc   -I.  -I../../lm  -I../liborc   -c -o borrow_chi.o borrow_chi.c
gcc   -I.  -I../../lm  -I../liborc   -c -o borrowed_clashes.o borrowed_clashes.c
gcc   -I.  -I../../lm  -I../liborc   -c -o build_stuff.o build_stuff.c
gcc   -I.  -I../../lm  -I../liborc   -c -o check_rotamers.o check_rotamers.c
gcc   -I.  -I../../lm  -I../liborc   -c -o clash_check.o clash_check.c
gcc   -I.  -I../../lm  -I../liborc   -c -o combo_utility.o combo_utility.c

davipatti

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [

davipatti

#!/bin/bash

min=60

say "Testing"
sleep 1
say "Testing"
sleep 1

davipatti

-I: Adding /Users/david/bin/amber14/dat/leap/prep to search path.
-I: Adding /Users/david/bin/amber14/dat/leap/lib to search path.
-I: Adding /Users/david/bin/amber14/dat/leap/parm to search path.
-I: Adding /Users/david/bin/amber14/dat/leap/cmd to search path.
-s: Ignoring startup file: leaprc
-f: Source tleapIn.

Welcome to LEaP!
Sourcing: ./tleapIn
----- Source: /Users/david/bin/amber14/dat/leap/cmd/leaprc.ff12SB

davipatti

/usr/local/bin/speedtest-cli --csv > ~/.speedtest.log.csv

davipatti

#!/bin/bash -e

cd /tmp
wget "https://sourceforge.net/projects/pymol/files/pymol/2/pymol-v2.1.0.tar.bz2"
tar -xf pymol-v2.1.0.tar.bz2
cd pymol
mkdir -p ~/bin/pymol/modules

python2.7 setup.py build install \
    --install-scripts=~/bin/pymol \

davipatti

mzhyHzqa@EFYTFIGFUJEEEi@Mc@Bk@DICk@Sa@C[WmAIOCGM?KDD@?VGjAKv@Dx@\DUz@D^?r@Ib@Ct@HdA@v@JJFABDNBDFBXAdAr@CfBQNBLG|@KFABDXIp@ILIj@Ix@WfAKNKD??JDAJBTEP@L?~@SP?`@EJO\Kl@C\EXILAv@Z\CJQvAqAjAcA`As@l@k@b@u@V_@jC_DCEBMT]b@_@hAc@LUzA{An@e@^]bBw@l@c@`@Qh@_@V[r@g@^Ub@QRAZGJ?rAe@JKx@]~AcAj@SdBeAXWj@Yz@w@LA|@_@BUO{@KkA]{AG{@G[@YIw@IgBCUYgAU[IYKIOu@@uANuA@_BAa@o@eIc@uHKcCKaAo@cLOWCi@I[I_A?}@KYAwA]eFS}BG[IyAOiBUuBQ}BMqBAu@SmBCo@c@gDa@{AG]IQCSGC@G?SBEGq@AcAHgAFaF@gAImCRi@B]Iy@?cCRaEh@}GNyBB{@L}ABa@RuBJ}BV_CF}AE{B@[W{AEi@Ks@Aq@GmAiAkLUoAYcDUaBQ_BOOCS?Wg@aCc@}AMQSEm@eAW[]SQGo@e@UGIGIMOCa@Se@][[M[c@e@_@k@uAyCm@_BSy@_@mAo@kAa@g@a@c@u@e@wBkBw@g@s@i@WEa@MyC_AiAMSGwACSDa@@QNc@CSFYGK?KBe@RK@MGGKEMZ}ADe@PmFHw@XmGNkAGa@Wy@@a@P_@FU@YOi@g@oAKe@Ks@WiDG[YaDaAgGAu@GIK]K}@Qy@gAsHq@gEKa@?c@Ig@KWDKEEGc@Eu@MaA}@_F{@yFAo@YcACYIWEg@UkAGi@i@cC_@kAo@yA_AoAE?GJGCQFMKOm@AQDg@FQBk@GgGKsDGkAQyBGcBO_AC_HC[Bq@G[Es@@WKkB@e@EEQAIG{@qAm@a@MSKE@Kd@yACHC@AILaATu@p@uADYHUTgALYj@oBRgA\sAFEFBHM?I@H`@d@DTFLB
}|hyHvta@@XHw@Uu@]k@Ri@BYHUE}@_B_BKe@IMh@e@?jDC\@VDf@\h

davipatti

Compiling TensorFlow with GPU support on Mac

Compiling TensorFlow on a mac with GPU is no longer officially supported. But it's still possible and a lot of fun(!) to compile.

I mainly followed this repo:

• https://github.com/xlvecle/tensorflow-macOS-gpu

Here is a run down of everything I did: