Xiaowei Song dawnsong

## anaconda4cygwin.bash_profile
#https://stackoverflow.com/questions/36969824/using-anaconda-environments-with-cygwin-on-windows
#  Anaconda Environment Selection - Plese set CONDA_BASE_DIR to the directory
#  containing the base installation of anaconda/miniconda.

export CONDA_BASE_DIR=/cygdrive/d/Anaconda3

#  Proxy Servers & Network Setup (if needed)

export HTTP_PROXY=
export HTTPS_PROXY=

## flask-port80-without-sudo.md

      
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                dawnsong
                / flask-port80-without-sudo.md
            
            
              Created
              January 23, 2022 22:53
                — forked from justinmklam/flask-port80-without-sudo.md
            
              
                Run a flask app on port 80 without sudo.
              
          
    Flask apps are bound to port 5000 by default. To bind it to port 80, you would need to change the port as follows:
if __name__ == '__main__':
    app.run(host='0.0.0.0', port=80, debug=True)
And to run it:


## lut_convertToFslview.sh
#!/bin/bash
#
# CALL AS:        lut_convertToFslview.sh
#                 (no arguments: input and output files defined below)
#
# CREATED:        20130430 by stowler@gmail.com
# LAST UPDATED:   same
#
#
#

## memusg
#!/usr/bin/env bash
# memusg -- Measure memory usage of processes
# Usage: memusg COMMAND [ARGS]...
#
# Author: Jaeho Shin <netj@sparcs.org>
# Created: 2010-08-16
############################################################################
# Copyright 2010 Jaeho Shin.                                               #
#                                                                          #
# Licensed under the Apache License, Version 2.0 (the "License");          #

## go2turinglib.js
var parser = document.createElement('a');
parser.href = window.location.href ;
console.debug(parser.hostname) ;
parser.hostname=parser.hostname+'.turing.library.northwestern.edu' ;
console.debug(parser.href) ;
window.location.href=parser.href ;

## 0_reuse_code.js
// Use Gists to store code you would like to remember later on
console.log(window); // log the "window" object to the console

## springer-free-maths-books.md

      
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                dawnsong
                / springer-free-maths-books.md
            
            
              Created
              December 29, 2015 23:31
                — forked from bishboria/springer-free-maths-books.md
            
              
                Springer have made a bunch of books available for free, here are the direct links
              
          
    Direct links to free Springer books (pdf versions)

Graduate texts in mathematics

duplicates = multiple editions
A Classical Introduction to Modern Number Theory, Kenneth Ireland Michael Rosen
A Classical Introduction to Modern Number Theory, Kenneth Ireland Michael Rosen

  
## mutual_info.py
'''
Non-parametric computation of entropy and mutual-information

Adapted by G Varoquaux for code created by R Brette, itself
from several papers (see in the code).

These computations rely on nearest-neighbor statistics
'''
import numpy as np

## node-and-npm-in-30-seconds.sh
echo 'export PATH=$HOME/local/bin:$PATH' >> ~/.bashrc
. ~/.bashrc
mkdir ~/local
mkdir ~/node-latest-install
cd ~/node-latest-install
curl http://nodejs.org/dist/node-latest.tar.gz | tar xz --strip-components=1
./configure --prefix=~/local
make install # ok, fine, this step probably takes more than 30 seconds...
curl https://www.npmjs.org/install.sh | sh

## warpinfo.rst

      
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                dawnsong
                / warpinfo.rst
            
            
              Last active
              January 20, 2017 21:10
                — forked from satra/warpinfo.rst
            
          
    ANTS : http://picsl.upenn.edu/ANTS/
c3d : http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Convert3D
export PATH=/software/ANTS-dev:$PATH

c3d_affine_tool -ref [A] -src [B] bbreg.mat -fsl2ras -oitk fsl2antsAffine.txt

WarpImageMultiTransform 3 [B] [C] -R [D] [A_Warp].nii.gz [A_Affine].txt fsl2antsAffine.txt
	#https://stackoverflow.com/questions/36969824/using-anaconda-environments-with-cygwin-on-windows
	# Anaconda Environment Selection - Plese set CONDA_BASE_DIR to the directory
	# containing the base installation of anaconda/miniconda.

	export CONDA_BASE_DIR=/cygdrive/d/Anaconda3

	# Proxy Servers & Network Setup (if needed)

	export HTTP_PROXY=
	export HTTPS_PROXY=
	#!/bin/bash
	#
	# CALL AS: lut_convertToFslview.sh
	# (no arguments: input and output files defined below)
	#
	# CREATED: 20130430 by stowler@gmail.com
	# LAST UPDATED: same
	#
	#
	#
	#!/usr/bin/env bash
	# memusg -- Measure memory usage of processes
	# Usage: memusg COMMAND [ARGS]...
	#
	# Author: Jaeho Shin <netj@sparcs.org>
	# Created: 2010-08-16
	############################################################################
	# Copyright 2010 Jaeho Shin. #
	# #
	# Licensed under the Apache License, Version 2.0 (the "License"); #
	var parser = document.createElement('a');
	parser.href = window.location.href ;
	console.debug(parser.hostname) ;
	parser.hostname=parser.hostname+'.turing.library.northwestern.edu' ;
	console.debug(parser.href) ;
	window.location.href=parser.href ;
	// Use Gists to store code you would like to remember later on
	console.log(window); // log the "window" object to the console
	'''
	Non-parametric computation of entropy and mutual-information

	Adapted by G Varoquaux for code created by R Brette, itself
	from several papers (see in the code).

	These computations rely on nearest-neighbor statistics
	'''
	import numpy as np
	echo 'export PATH=$HOME/local/bin:$PATH' >> ~/.bashrc
	. ~/.bashrc
	mkdir ~/local
	mkdir ~/node-latest-install
	cd ~/node-latest-install
	curl http://nodejs.org/dist/node-latest.tar.gz \| tar xz --strip-components=1
	./configure --prefix=~/local
	make install # ok, fine, this step probably takes more than 30 seconds...
	curl https://www.npmjs.org/install.sh \| sh