build.checkoutDependencies.xml

<?xml version="1.0"?>
<!--

Targets for checking out dependencies for the healthchecks.

Use

	ant clean

to delete the directory with the checkouts.

-->
<project name="checkoutDependencies" default="checkoutPerlDependencies" basedir="..">

	<property file="buildfiles/build.properties" />

	<!--
		Directory where checkout will be placed
	-->
	<property name="perlDependencyCheckoutDir" value="perlcode" />

        <target 
		name        = "setPermissions" 
		description = "Adds run permissions to th perl/run_healthcheck.pl program which is necessary for running perl based healthchecks." 
	>
		<chmod file="./perl/run_healthcheck.pl" perm="u+x" />
	</target>

        <target 
		name        = "checkoutPerlDependencies" 
		description = "" 
		depends     = "checkoutBioperlDependency, checkoutEnsemblDependency, setPermissions"
	/>

	<!--
		All checkouts go into this directory
	-->
        <target name="createPerlDependencyDir" description="">
		<mkdir dir="${perlDependencyCheckoutDir}" />
	</target>

	<!--
		Deletes the directory with the checkouts
	-->
        <target name="clean" description="">
		<delete dir="${perlDependencyCheckoutDir}"/>
	</target>

	<!--
		Checkouts of the Ensembl API
	-->
        <target name="checkoutEnsemblDependency" description="" depends="createPerlDependencyDir">

        <exec dir="." executable="git" os="Linux,Mac OS X">
          <arg line="clone --branch master https://github.com/Ensembl/ensembl-variation ${perlDependencyCheckoutDir}/ensembl-variation" />
        </exec>
        <exec dir="." executable="git" os="Linux,Mac OS X">
          <arg line="clone --branch master https://github.com/Ensembl/ensembl-funcgen ${perlDependencyCheckoutDir}/ensembl-funcgen" />
        </exec>
        <exec dir="." executable="git" os="Linux,Mac OS X">
          <arg line="clone --branch master https://github.com/Ensembl/ensembl ${perlDependencyCheckoutDir}/ensembl" />
        </exec>
	</target>

	<!--
		Checkouts of Bioperl
	-->
        <target name="checkoutBioperlDependency" description="" depends="createPerlDependencyDir">

		<mkdir dir="${perlDependencyCheckoutDir}/bioperl"/>

		<exec dir="." executable="git" os="Linux,Mac OS X">
		  <arg line="clone --branch v1.6.x https://github.com/bioperl/bioperl-live ${perlDependencyCheckoutDir}/bioperl" />
		</exec>

	</target>

</project>