Skip to content

Instantly share code, notes, and snippets.

@dbolser
Created November 18, 2015 22:56
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save dbolser/b3333e890ad38e85c3db to your computer and use it in GitHub Desktop.
Save dbolser/b3333e890ad38e85c3db to your computer and use it in GitHub Desktop.
Program: tabix (TAB-delimited file InderXer)
Version: 0.2.5 (r1005)
Usage: tabix <in.tab.bgz> [region1 [region2 [...]]]
Options: -p STR preset: gff, bed, sam, vcf, psltbl [gff]
-s INT sequence name column [1]
-b INT start column [4]
-e INT end column; can be identical to '-b' [5]
-S INT skip first INT lines [0]
-c CHAR symbol for comment/meta lines [#]
-r FILE replace the header with the content of FILE [null]
-B region1 is a BED file (entire file will be read)
-0 zero-based coordinate
-h print also the header lines
-H print only the header lines
-l list chromosome names
-f force to overwrite the index
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment