ddbj-repo

#!/usr/bin/perl

# usage: perl wabi-client conf.json

use strict;
use warnings;
use LWP::UserAgent;
use HTTP::Request::Common;
use JSON qw/encode_json decode_json/;

ddbj-repo

// -*- java -*-
 
import java.io.BufferedReader;
import java.io.FileReader;
import java.io.FileWriter;
import java.io.IOException;
import java.util.Map;
import java.util.HashMap;
import java.util.Date;
 

ddbj-repo

>my query sequence 1
CACCCTCTCTTCACTGGAAAGGACACCATGAGCACGGAAAGCATGATCCAGGACGTGGAA
GCTGGCCGAGGAGGCGCTCCCCAGGAAGACAGCAGGGCCCCAGGGCTCCAGGCGGTGCTG
GTTCCTCAGCCTCTTCTCCTTCCTGCTCGTGGCAGGCGCCGCCAC

ddbj-repo

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apche.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>jp.ac.nig.ddbj</groupId>
  <artifactId>wabi-client</artifactId>
  <version>1</version>
 
  <properties>
    <compiler.version>1.6</compiler.version>
  </properties>

ddbj-repo

# -*- perl -*-

use strict;
use warnings;
use JSON;
use HTTP::Request::Common;
use HTTP::Status qw(is_success is_client_error);
use LWP::UserAgent;

my $WABI_URL_ROOT = "http://ddbj.nig.ac.jp/wabi";

ddbj-repo

# -*- ruby -*-
 
require "json"
require "net/http"
require "uri"
 
class BlastCondition
  attr_accessor :params
  def initialize
    self.params = {

ddbj-repo

$ tree -F
.
├── blast_condition.fasta
├── blast_condition.txt
└── example.rb
$ ls -l
合計 12
-rw-r--r-- 1 user users  189  6  6 13:28 blast_condition.fasta
-rw-r--r-- 1 user users  110  6  6 13:30 blast_condition.txt
-rw-r--r-- 1 user users 2781  6  6 13:36 example.rb

ddbj-repo

BLASTN 2.2.26 [Sep-21-2011]
 
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
 
Query= my query sequence 1
         (165 letters)
 

ddbj-repo

import java.util.LinkedHashMap;
import org.springframework.util.LinkedMultiValueMap;
import org.springframework.util.MultiValueMap;
import org.springframework.web.client.RestTemplate;
import org.springframework.web.client.HttpClientErrorException;
import net.arnx.jsonic.JSON;

/*
 * (中略)
 */

ddbj-repo

import java.util.LinkedHashMap;
import org.springframework.util.LinkedMultiValueMap;
import org.springframework.util.MultiValueMap;
import org.springframework.web.client.RestTemplate;
import org.springframework.web.client.HttpClientErrorException;
import net.arnx.jsonic.JSON;
 
/*
 * (中略)
 */