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decodebiology/sample.GTF

Created May 5, 2015 08:32
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Sample GTF file
Raw
sample.GTF
chr1 processed_transcript exon 11869 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; exon_number "1"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; exon_id "ENSE00002234944";
chr1 processed_transcript exon 12613 12721 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; exon_number "2"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; exon_id "ENSE00003582793";
chr1 processed_transcript exon 13221 14409 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; exon_number "3"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; exon_id "ENSE00002312635";
chr1 transcribed_unprocessed_pseudogene exon 11872 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; exon_number "1"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; exon_id "ENSE00002234632";
chr1 transcribed_unprocessed_pseudogene exon 12613 12721 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; exon_number "2"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; exon_id "ENSE00003608237";
chr1 transcribed_unprocessed_pseudogene exon 13225 14412 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; exon_number "3"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; exon_id "ENSE00002306041";
chr1 transcribed_unprocessed_pseudogene exon 11874 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "1"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; exon_id "ENSE00002269724";
chr1 transcribed_unprocessed_pseudogene exon 12595 12721 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "2"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; exon_id "ENSE00002270865";
chr1 transcribed_unprocessed_pseudogene exon 13403 13655 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "3"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; exon_id "ENSE00002216795";
chr1 transcribed_unprocessed_pseudogene exon 13661 14409 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "4"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; exon_id "ENSE00002303382";
chr1 transcribed_unprocessed_pseudogene exon 12010 12057 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "1"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; exon_id "ENSE00001948541";
chr1 transcribed_unprocessed_pseudogene exon 12179 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "2"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; exon_id "ENSE00001671638";
chr1 transcribed_unprocessed_pseudogene exon 12613 12697 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "3"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; exon_id "ENSE00001758273";
chr1 transcribed_unprocessed_pseudogene exon 12975 13052 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "4"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; exon_id "ENSE00001799933";
chr1 transcribed_unprocessed_pseudogene exon 13221 13374 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "5"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; exon_id "ENSE00001746346";
chr1 transcribed_unprocessed_pseudogene exon 13453 13670 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "6"; gene_name "DDX11L1"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; exon_id "ENSE00001863096";
chr1 unprocessed_pseudogene exon 29321 29370 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "1"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001718035";
chr1 unprocessed_pseudogene exon 24738 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "2"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00003624050";
chr1 unprocessed_pseudogene exon 18268 18379 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "3"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001642865";
chr1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "4"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00003638984";
chr1 unprocessed_pseudogene exon 17602 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "5"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001699689";
chr1 unprocessed_pseudogene exon 17233 17364 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "6"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001656010";
chr1 unprocessed_pseudogene exon 16854 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "7"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001760358";
chr1 unprocessed_pseudogene exon 16607 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "8"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00003618297";
chr1 unprocessed_pseudogene exon 15904 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "9"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001375216";
chr1 unprocessed_pseudogene exon 15796 15901 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "10"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00001388009";
chr1 unprocessed_pseudogene exon 14970 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "11"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00003497546";
chr1 unprocessed_pseudogene exon 14363 14829 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "12"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; exon_id "ENSE00003511598";
chr1 unprocessed_pseudogene exon 24734 24886 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "1"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00002254515";
chr1 unprocessed_pseudogene exon 18268 18369 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "2"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00002303227";
chr1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "3"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00003638984";
chr1 unprocessed_pseudogene exon 17606 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "4"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00003629019";
chr1 unprocessed_pseudogene exon 17498 17504 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "5"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00002285713";
chr1 unprocessed_pseudogene exon 17233 17364 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "6"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00001656010";
chr1 unprocessed_pseudogene exon 16854 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "7"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00001760358";
chr1 unprocessed_pseudogene exon 14970 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "8"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00003497546";
chr1 unprocessed_pseudogene exon 14363 14829 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "9"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; exon_id "ENSE00003511598";
chr1 unprocessed_pseudogene exon 29321 29370 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "1"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00001718035";
chr1 unprocessed_pseudogene exon 24738 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "2"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003603734";
chr1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "3"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003513603";
chr1 unprocessed_pseudogene exon 17606 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "4"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003565315";
chr1 unprocessed_pseudogene exon 17233 17368 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "5"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003685767";
chr1 unprocessed_pseudogene exon 16858 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "6"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003553898";
chr1 unprocessed_pseudogene exon 16607 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "7"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003621279";
chr1 unprocessed_pseudogene exon 15796 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "8"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00002030414";
chr1 unprocessed_pseudogene exon 14970 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "9"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003591210";
chr1 unprocessed_pseudogene exon 14363 14829 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "10"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; exon_id "ENSE00003693168";
chr1 unprocessed_pseudogene exon 29534 29570 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "1"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00001890219";
chr1 unprocessed_pseudogene exon 24738 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "2"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003507205";
chr1 unprocessed_pseudogene exon 18268 18366 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "3"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003477500";
chr1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "4"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003565697";
chr1 unprocessed_pseudogene exon 17606 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "5"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003475637";
chr1 unprocessed_pseudogene exon 17233 17368 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "6"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003502542";
chr1 unprocessed_pseudogene exon 16858 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "7"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003553898";
chr1 unprocessed_pseudogene exon 16607 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "8"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00003621279";
chr1 unprocessed_pseudogene exon 15796 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "9"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00002030414";
chr1 unprocessed_pseudogene exon 15005 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "10"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00001935574";
chr1 unprocessed_pseudogene exon 14404 14501 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "11"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; exon_id "ENSE00001843071";
chr1 unprocessed_pseudogene exon 29534 29806 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "1"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00001378845";
chr1 unprocessed_pseudogene exon 24737 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "2"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00002317443";
chr1 unprocessed_pseudogene exon 18268 18366 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "3"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00003682243";
chr1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "4"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00003638984";
chr1 unprocessed_pseudogene exon 17602 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "5"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00001699689";
chr1 unprocessed_pseudogene exon 17233 17364 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "6"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00001656010";
chr1 unprocessed_pseudogene exon 16858 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "7"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00003632482";
chr1 unprocessed_pseudogene exon 16748 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "8"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00002275850";
chr1 unprocessed_pseudogene exon 16607 16745 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "9"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00002241734";
chr1 unprocessed_pseudogene exon 15904 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "10"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00001375216";
chr1 unprocessed_pseudogene exon 15796 15901 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "11"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00001388009";
chr1 unprocessed_pseudogene exon 15000 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "12"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00002215305";
chr1 unprocessed_pseudogene exon 14411 14502 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "13"; gene_name "WASH7P"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; exon_id "ENSE00002295553";
chr1 lincRNA exon 29554 30039 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; exon_number "1"; gene_name "MIR1302-11"; gene_biotype "lincRNA"; transcript_name "MIR1302-11-001"; exon_id "ENSE00001947070";
chr1 lincRNA exon 30564 30667 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; exon_number "2"; gene_name "MIR1302-11"; gene_biotype "lincRNA"; transcript_name "MIR1302-11-001"; exon_id "ENSE00001922571";
chr1 lincRNA exon 30976 31097 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; exon_number "3"; gene_name "MIR1302-11"; gene_biotype "lincRNA"; transcript_name "MIR1302-11-001"; exon_id "ENSE00001827679";
chr1 lincRNA exon 30267 30667 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000469289"; exon_number "1"; gene_name "MIR1302-11"; gene_biotype "lincRNA"; transcript_name "MIR1302-11-002"; exon_id "ENSE00001841699";
chr1 lincRNA exon 30976 31109 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000469289"; exon_number "2"; gene_name "MIR1302-11"; gene_biotype "lincRNA"; transcript_name "MIR1302-11-002"; exon_id "ENSE00001890064";
chr1 miRNA exon 30366 30503 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000607096"; exon_number "1"; gene_name "MIR1302-11"; gene_biotype "lincRNA"; transcript_name "MIR1302-11-201"; exon_id "ENSE00003695741";
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