neo bugs

import_bug.py

In [109]: from neo.io.neuroexplorerio import NeuroExplorerIO
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
/Users/dedan/projects/fu/unmixpain/<ipython-input-109-f477c5eea2d3> in <module>()
----> 1 from neo.io.neuroexplorerio import NeuroExplorerIO

/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/io/neuroexplorerio.py in <module>()
     19 from .baseio import BaseIO
     20 from ..core import *
---> 21 from .tools import create_many_to_one_relationship
     22 
     23 import numpy as np

/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/io/tools.py in <module>()
      8 
      9 from ..core import *
---> 10 from ..description import one_to_many_reslationship, many_to_one_reslationship
     11 
     12 #def finalize_block(block):


/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/description.py in <module>()
     36 """
     37 
---> 38 from .core import objectlist
     39 
     40 import quantities as pq

ImportError: cannot import name objectlist

neur_explorer.py

In [6]: from neo.io import NeuroExplorerIO

In [7]: ui = NeuroExplorerIO('../data/2010-12-13-u3_iSortd.nex')

In [8]: ui.read()
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (17, 0))

---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
/Users/dedan/projects/fu/unmixpain/<ipython-input-8-3aedc972bade> in <module>()
----> 1 ui.read()

/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/io/baseio.pyc in read(self, lazy, cascade, **kargs)
     84             if not cascade:
     85                 return bl
---> 86             seg = self.read_segment(lazy = lazy, cascade = cascade,  **kargs)
     87             bl.segments.append(seg)
     88             create_many_to_one_relationship(bl)

/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/io/neuroexplorerio.pyc in read_segment(self, lazy, cascade)
    122                                                     t_start = globalHeader['tbeg']/globalHeader['freq']*pq.s,
    123                                                     t_stop = globalHeader['tend']/globalHeader['freq']*pq.s,
--> 124                                                     name = entityHeader['name'],
    125                                                     )
    126                 sptr.annotate(channel_index = entityHeader['WireNumber'])

/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/core/spiketrain.pyc in __new__(cls, times, t_stop, units, dtype, copy, sampling_rate, t_start, waveforms, left_sweep, name, file_origin, description, **annotations)
    151         if obj.size > 0:
    152             _check_time_in_range(obj.min(), obj.t_start, obj.t_stop)
--> 153             _check_time_in_range(obj.max(), obj.t_start, obj.t_stop)
    154         return obj
    155 

/Users/dedan/.virtualenvs/neo/lib/python2.7/site-packages/neo/core/spiketrain.pyc in _check_time_in_range(value, t_start, t_stop)
     35             raise ValueError("The first spike (%s) is before t_start (%s)" % (value, t_start))
     36         if value.max() > t_stop:
---> 37             raise ValueError("The last spike (%s) is after t_stop (%s)" % (value, t_stop))
     38     else:
     39         if value < t_start:

ValueError: The last spike (1473.56225586 s) is after t_stop (1473.56225 s)