Deren Eaton dereneaton

## tutorial_GBS_2.16.ipynb

      
              2 files
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / tutorial_GBS_2.16.ipynb
            
            
              Last active
              August 29, 2015 13:56
            
              
                ** PERMALINKED **
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## tutorial_ddRAD_3.0.4.ipynb

      
              7 files
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / tutorial_ddRAD_3.0.4.ipynb
            
            
              Last active
              August 29, 2015 13:57
            
              
                ** PERMALINKED **
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## pyRAD_v.2.0.ipynb

      
              3 files
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / pyRAD_v.2.0.ipynb
            
            
              Last active
              August 29, 2015 13:57
            
              
                ** PERMALINKED ** 
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## Carex.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / Carex.ipynb
            
            
              Last active
              August 29, 2015 14:01
            
              
                ** PERMALINKED **
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## clusthist.py
## import libraries
import glob
import gzip

## read in clust files (enter your data location here)
clustfiles = glob.glob("clust.85/*.clustS.gz")

## create a location to write results to
outfile = open("depthstats.txt", 'w')

## cyatho_notebook.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / cyatho_notebook.ipynb
            
            
              Last active
              August 29, 2015 14:13
            
              
                Cyatho locus sharing
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## testing_cat.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / testing_cat.ipynb
            
            
              Last active
              August 29, 2015 14:20
            
              
                raxml snpfreq calls
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## testing.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                dereneaton
                / testing.ipynb
            
            
              Created
              April 28, 2015 19:20
            
              
                pyrad data types testing
              
          
      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## gist:47d7555130d0be516ef0
{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [

## gist:3e50570074b49c0485e6
<style>

html {
  font-size: 62.5% !important; }
body {
  font-size: 1.5em !important; /* currently ems cause chrome bug misinterpreting rems on body element */
  line-height: 1.6 !important;
  font-weight: 400 !important;
  font-family: "Raleway", "HelveticaNeue", "Helvetica Neue", Helvetica, Arial, sans-serif !important;
  color: #222 !important; }
	## import libraries
	import glob
	import gzip

	## read in clust files (enter your data location here)
	clustfiles = glob.glob("clust.85/*.clustS.gz")

	## create a location to write results to
	outfile = open("depthstats.txt", 'w')
	{
	"cells": [
	{
	"cell_type": "code",
	"execution_count": 1,
	"metadata": {
	"collapsed": true
	},
	"outputs": [],
	"source": [
	<style>

	html {
	font-size: 62.5% !important; }
	body {
	font-size: 1.5em !important; /* currently ems cause chrome bug misinterpreting rems on body element */
	line-height: 1.6 !important;
	font-weight: 400 !important;
	font-family: "Raleway", "HelveticaNeue", "Helvetica Neue", Helvetica, Arial, sans-serif !important;
	color: #222 !important; }