ffmpeg -i fcp_capture.mov -map 0:v -map 0:a -map -0:d -c copy -r 30000/1001 -y output.mov

timecode copy 2

ffmpeg -i fcp_capture.mov -map 0:v -map 0:a -map -0:d -c copy -r 30000/1001 -y output.mov
ffmpeg version 2.3 Copyright (c) 2000-2014 the FFmpeg developers
  built on Jul 27 2014 23:10:47 with Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
  configuration: --prefix=/usr/local/Cellar/ffmpeg/2.3 --enable-shared --enable-pthreads --enable-gpl --enable-version3 --enable-nonfree --enable-hardcoded-tables --enable-avresample --enable-vda --cc=clang --host-cflags= --host-ldflags= --enable-libx264 --enable-libfaac --enable-libmp3lame --enable-libxvid --enable-libfreetype --enable-ffplay --enable-libopenjpeg --extra-cflags='-I/usr/local/Cellar/openjpeg/1.5.1_1/include/openjpeg-1.5 '
  libavutil      52. 92.100 / 52. 92.100
  libavcodec     55. 69.100 / 55. 69.100
  libavformat    55. 48.100 / 55. 48.100
  libavdevice    55. 13.102 / 55. 13.102
  libavfilter     4. 11.100 /  4. 11.100
  libavresample   1.  3.  0 /  1.  3.  0
  libswscale      2.  6.100 /  2.  6.100
  libswresample   0. 19.100 /  0. 19.100
  libpostproc    52.  3.100 / 52.  3.100
Input #0, mov,mp4,m4a,3gp,3g2,mj2, from 'fcp_capture.mov':
  Metadata:
    major_brand     : qt  
    minor_version   : 537199360
    compatible_brands: qt  
    creation_time   : 2012-11-28 08:06:53
  Duration: 00:00:00.07, start: 0.100434, bitrate: 173589 kb/s
    Stream #0:0(eng): Video: rawvideo (2vuy / 0x79757632), uyvy422, 720x486, 66983 kb/s, 11.96 fps, 7.47 tbr, 2997 tbn, 2997 tbc (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
      encoder         : Uncompressed 8 bit
      timecode        : 00:59:14;24
    Stream #0:1(eng): Subtitle: eia_608 (c608 / 0x38303663), 640x480, 1 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
    Stream #0:2(eng): Audio: pcm_s24le (in24 / 0x34326E69), 48000 Hz, stereo, s32, 2304 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
    Stream #0:3(eng): Audio: pcm_s24le (in24 / 0x34326E69), 48000 Hz, mono, s32, 1152 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
    Stream #0:4(eng): Audio: pcm_s24le (in24 / 0x34326E69), 48000 Hz, mono, s32, 1152 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
    Stream #0:5(eng): Data: none (tmcd / 0x64636D74) (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
      timecode        : 00:59:14;24
Output #0, mov, to 'output.mov':
  Metadata:
    major_brand     : qt  
    minor_version   : 537199360
    compatible_brands: qt  
    encoder         : Lavf55.48.100
    Stream #0:0(eng): Video: rawvideo (2vuy / 0x79757632), uyvy422, 720x486, q=2-31, 66983 kb/s, 11.96 fps, 30k tbn, 29.97 tbc (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
      encoder         : Uncompressed 8 bit
      timecode        : 00:59:14;24
    Stream #0:1(eng): Audio: pcm_s24le (in24 / 0x34326E69), 48000 Hz, stereo, 2304 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
    Stream #0:2(eng): Audio: pcm_s24le (in24 / 0x34326E69), 48000 Hz, mono, 1152 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
    Stream #0:3(eng): Audio: pcm_s24le (in24 / 0x34326E69), 48000 Hz, mono, 1152 kb/s (default)
    Metadata:
      creation_time   : 2012-11-28 08:06:53
      handler_name    : Apple Alias Data Handler
Stream mapping:
  Stream #0:0 -> #0:0 (copy)
  Stream #0:2 -> #0:1 (copy)
  Stream #0:3 -> #0:2 (copy)
  Stream #0:4 -> #0:3 (copy)
Press [q] to stop, [?] for help
frame=    2 fps=0.0 q=-1.0 Lsize=    1407kB time=00:00:00.16 bitrate=68967.8kbits/s    
video:1367kB audio:38kB subtitle:0kB other streams:0kB global headers:0kB muxing overhead: 0.212992%