permissions.php

<?php

## Function to set file permissions to 0644 and folder permissions to 0755

function AllDirChmod( $dir = "./", $dirModes = 0755, $fileModes = 0644 ){
   $d = new RecursiveDirectoryIterator( $dir );
   foreach( new RecursiveIteratorIterator( $d, 1 ) as $path ){
      if( $path->isDir() ) chmod( $path, $dirModes );
      else if( is_file( $path ) ) chmod( $path, $fileModes );
  }
}

## Function to clean out the contents of specified directory

function isDirEmpty($dir){
     return (($files = @scandir($dir)) && count($files) <= 2);
}

echo "----------------------- CLEANUP START -------------------------<br/>";
$start = (float) array_sum(explode(' ',microtime()));
echo "<br/>*************** SETTING PERMISSIONS ***************<br/>";
echo "Setting all folder permissions to 755<br/>";
echo "Setting all file permissions to 644<br/>";
AllDirChmod( "." );

To change the files and directory permissions
Setup:

1. Upload the file in your root
2. run the file to change the permissions of all files and directories