dfcrmuser

Wed Apr 22 14:50:45 tests > ./run_tests.sh 
Check for the presence of runs in an Illumina SampleSheet. ... ok
Convert CSV Illumina SampleSheet to YAML. ... ok
Test variant calling with GATK pipeline. ... [2015-04-22T18:51Z] Resource requests: bwa, sambamba, samtools; memory: 2.00, 2.00; cores: 16, 16, 16
[2015-04-22T18:51Z] Configuring 1 jobs to run, using 1 cores each with 2.00g of memory reserved for each job
[2015-04-22T18:51Z] Timing: organize samples
[2015-04-22T18:51Z] multiprocessing: organize_samples
[2015-04-22T18:51Z] Using input YAML configuration: /ifs/scratch/c2b2/ngs_lab/db2175/Projects/PersonalizedCancer/FullPipeline/bcbio-nextgen/tests/data/automated/run_info-variantcall.yaml
[2015-04-22T18:51Z] Checking sample YAML configuration: /ifs/scratch/c2b2/ngs_lab/db2175/Projects/PersonalizedCancer/FullPipeline/bcbio-nextgen/tests/data/automated/run_info-variantcall.yaml
[2015-04-22T18:51Z] Testing minimum versions of installed programs

dfcrmuser

Wed Apr 22 14:52:42 tests > uname -a
Linux hb4c6n8.hpc 2.6.32-431.17.1.el6.x86_64 #1 SMP Wed May 7 23:32:49 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
Wed Apr 22 14:52:54 tests > cat /etc/*-release
CentOS release 6.5 (Final)
LSB_VERSION=base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch
CentOS release 6.5 (Final)
CentOS release 6.5 (Final)