chr21 subset lumpy results: >cat 3_2014-05-06_ceu-sort-svs-NA12878-filter.bedpe | awk '$1=='21' || $4=='21'' | cut -f11 | sort | uniq -c
212 TYPE:DELETION
43 TYPE:DUPLICATION
5 TYPE:INTERCHROM
10 TYPE:INVERSION
Full CEU lumpy results (chr21): >cat 2_2014-03-21_ceu-sort-svs-NA12878-filter.bedpe | awk '$1=='21' || $4=='21'' | cut -f11 | sort | uniq -c
201 TYPE:DELETION
55 TYPE:DUPLICATION
518 TYPE:INTERCHROM
14 TYPE:INVERSION
Deletions
Count
In Truth Set
Shared
175
33 (18.9%)
Subset Only
37
6 (16.2%)
Fullrun Only
26
1 (3.8%)
chr21 subset lumpy PASS results: >cat 3_2014-05-06_ceu-sort-svs-NA12878-filter.bedpe | awk '$1=='21' || $4=='21'' | grep PASS | cut -f11 | sort | uniq -c
85 TYPE:DELETION
31 TYPE:DUPLICATION
1 TYPE:INTERCHROM
5 TYPE:INVERSION
Full CEU lumpy PASS results (chr21): >cat 2_2014-03-21_ceu-sort-svs-NA12878-filter.bedpe | awk '$1=='21' || $4=='21'' | grep PASS | cut -f11 | sort | uniq -c
92 TYPE:DELETION
36 TYPE:DUPLICATION
245 TYPE:INTERCHROM
6 TYPE:INVERSION
Deletions
Count
In Truth Set
Shared
76
22 (28.9%)
Subset Only
9
3 (33.3%)
Fullrun Only
16
1 (6.3%)
