dgcamblor

#!/bin/bash

list_samples() {
    local dir="$1"
    local mode="${2:-line}"
    local samples=$(ls -1 "$dir" | awk -F'_' '{print $1}' | sort -uV)

    case "$mode" in
        line)
            echo "$samples" | paste -sd ' ' -

dgcamblor

#!/bin/bash

downsample_fastq() {
    local input_fastq=$1  #$ FASTQ in .gz compression (ID_1.fastq.gz)
    local downsample_factor=$2
    
    local base_name=$(basename "$input_fastq" .fastq.gz)
    local prefix="${base_name%%_*}"
    local suffix="${base_name#*_}"
    local output_fastq="${prefix}s_${suffix}.fastq.gz"  # Add an "s" to the ID