Profile.php

<?php

namespace cncflora\repository;

class Profiles {
    public $user = null;
    public $couchdb = null;
    public $db = null;

    public function __construct($user=null) {
        Utils::config();
        $this->user = $user;
        $this->couchdb = new \Nano\Nano('http://'.COUCH_USER.":".COUCH_PASS."@".COUCH_HOST.":".COUCH_PORT);
        $this->db = $this->couchdb->db->use(COUCH_BASE);
    }

    public function create($taxon) {
        if(!isset($this->user)) {
            throw new \Exception("Need a user");
        }

        $metadata = new \StdClass;
        $metadata->status = "open";
        $metadata->contributor = $this->user->name;
        $metadata->contact = $this->user->email;
        $metadata->creator = $this->user->name;
        $metadata->created = time();
        $metadata->modified = time();
        $metadata->description = "Profile for ".$taxon->scientificName;
        $metadata->title  = "Profile for ".$taxon->scientificName;
        $metadata->source = "cncflora";
        $metadata->type = "profile";
        $metadata->valid = false;
        $metadata->identifier = "urn:lsid:cncflora.jbrj.gov.br:profile:".str_replace(' ',':',strtolower($taxon->scientificName)).":".time();

        $profile = new \StdClass;
        $profile->taxon = $taxon;
        $profile->metadata = $metadata;
        $profile->_id = $metadata->identifier;

        $r = $this->db->insert($profile,$profile->_id);

        $profile->_rev = $r->rev;
        return $profile;
    }

    public function get($id) {
        $obj = $this->db->get($id);
        if(!isset($obj->error))  {
            return $obj;
        } else {
            return null;
        }
    }

    public function update($profile) {
        $metadata = $profile->metadata;
        if(strpos($metadata->contact,$this->user->email) === false) {
            $metadata->contributor = $this->user->name ." ; ".$metadata->contributor;
            $metadata->contact = $this->user->email ." ; ".$metadata->contact;
        }
        $metadata->modified = time();

        $r = $this->db->insert($profile,$profile->_id);

        $profile->_rev = $r->rev;
        return $profile;
    }

    public function delete($profile) {
        return $this->db->destroy($profile->_id,$profile->_rev);
    }

}

ProfileTest.php

<?php

namespace cncflora\repository;

include_once 'vendor/autoload.php';

class ProfilesTest extends \PHPUnit_Framework_TestCase {

    public function setup() {
        $this->user = new \StdClass;
        $this->user->name = "Foo";
        $this->user->email = "foo@bar.com";
    }

    public function testProfiles() {
        $repo = new Profiles();
        $this->assertEquals($repo,$repo);
    }

    /**
     * @expectedException Exception 
     */
    public function testMustHaveUser() {
        $repo = new Profiles();

        $taxons = (new Species)->getSpecies('ACANTHACEAE');
        $taxon  = $taxons[0];
        $profile = $repo->create($taxon);
    }

    public function testCRUD() {
        $repo = new Profiles($this->user);

        $taxons = (new Species)->getSpecies('ACANTHACEAE');
        $taxon  = $taxons[0];
        $profile = $repo->create($taxon);

        $this->assertNotNull($profile);
        $this->assertNotNull($profile->_id);
        $this->assertEquals($profile->taxon,$taxon);

        $profilePersisted = $repo->get($profile->_id);

        $this->assertNotNull($profilePersisted);
        $this->assertEquals($profile,$profilePersisted);

        $profile->ecology = new \StdClass;
        $profile->ecology->resume = "Hello, World!";
        $repo->update($profile);

        $profilePersisted = $repo->get($profile->_id);
        $this->assertEquals($profilePersisted->ecology->resume,"Hello, World!");

        $repo->delete($profile);
        $profilePersisted = $repo->get($profile->_id);
        $this->assertNull($profilePersisted);
    }

    public function testMetadata() {
        $this->markTestIncomplete();
    }

    public function testPermissions() {
        $this->markTestIncomplete();
    }
}