PNDA Docker Instructions

instructions_for_pnda.md

Things that need to be done before the workshop:

1. Please ensure that you have a laptop with a 64 bit OS for the workshop
2. If you haven't had your imaging lab induction: please ask Chester to create an account for you on at least one of the imaging computers (for remote access). You don't need to do the induction with him yet, this is just to ensure that you can remotely access and copy some files.
3. Please open an account with spartan (https://dashboard.hpc.unimelb.edu.au/getting_started/). Best to do this today because it can take a couple of days for the request to get approved.
4. Install docker and run the command per the instructions below

Instructions for Docker

MACOS

1. Go to this link and download docker for Mac: https://www.docker.com/products/docker-desktop
2. Run the docker daemon. You’ll have to create a docker account and sign in
3. Open terminal on your mac and type in the command line: docker pull sination/pnda:101 to pull the image (the pull and extraction takes a few minutes)
4. Once it has sucessfully pulled, type in the command line: docker run -it -p 9999:9999 sination/pnda:101
5. Ensure that you see the same thing as in the image at the bottom of the page

WINDOWS 10 Pro, Enterprise or Education (64 BIT)

1. Go to this link and download docker for Mac: https://www.docker.com/products/docker-desktop
2. Run the docker daemon. You’ll have to create a docker account and sign in
3. Open a terminal window (Command Prompt or PowerShell, but not PowerShell ISE).
4. Type in the command line: docker pull sination/pnda:101 to pull the image (the pull and extraction takes a few minutes)
5. Once it has sucessfully pulled, type in the command line: docker run -it -p 9999:9999 sination/pnda:101
6. Ensure that you see the same thing as in the image at the bottom of the page

WINDOWS 7 AND ABOVE (Including Windows 10 Home) (64 BIT)

1. Download docker toolbox from here https://github.com/docker/kitematic/releases
2. Once downloaded click on the docer quick start icon
3. In the command line that opens up write docker pull sination/pnda:101 to pull the image
4. Once it has sucessfully pulled, type in the command line: docker run -it -p 9999:9999 sination/pnda:101
5. Ensure that you see the same thing as in the image at the bottom of the page

LINUX

1. Install Docker
2. Open terminal on your mac and type in the command line: docker pull sination/pnda:101 to pull the image (the pull and extraction takes a few minutes)
3. Once it has sucessfully pulled, type in the command line: docker run -it -p 9999:9999 sination/pnda:101
4. Ensure that you see the same thing as in the image at the bottom of the page

After you complete the process, please ensure that you see this in the terminal. The token will be different but this is what you should be able to see after the docker run command. Please let us know if you have any issues before the workshop so we can sort it out beforehand!