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dkoslicki/small_nodes.csv

Created June 27, 2023 14:27
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small_nodes.csv
We can make this file beautiful and searchable if this error is corrected: It looks like row 2 should actually have 8 columns, instead of 11. in line 1.
node_id,node_type,all_names,description,knowledge_source,link,synonyms,is_pathogen
Microbe:1,biolink:OrganismTaxon,['Archaea'],[('rank', 'superkingdom'), ('taxid', '2157')],['GTDB'],['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2157'],['GTDB:Archaea'],False
Microbe:2,biolink:OrganismTaxon,['Halobacteriota'],[('taxid', ''), ('rank', 'phylum')],['GTDB'],[],['GTDB:Halobacteriota'],False
Microbe:3,biolink:OrganismTaxon,['Methanosarcinia'],[('taxid', ''), ('rank', 'class')],['GTDB'],[],['GTDB:Methanosarcinia'],False
Microbe:4,biolink:OrganismTaxon,['Methanosarcinales'],[('taxid', '94695'), ('rank', 'order')],['GTDB'],['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=94695'],['GTDB:Methanosarcinales'],False
Microbe:5,biolink:OrganismTaxon,['Methanosarcinaceae'],[('taxid', '2206'), ('rank', 'family')],['GTDB'],['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2206'],['GTDB:Methanosarcinaceae'],False
Microbe:6,biolink:OrganismTaxon,['Methanosarcina'],[('taxid', '2207'), ('rank', 'genus')],['GTDB'],['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2207'],['GTDB:Methanosarcina'],False
Microbe:7,biolink:OrganismTaxon,['Methanosarcina mazei'],[('rank', 'species'), ('taxid', '2209')],['GTDB'],['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2209'],['GTDB:Methanosarcina mazei'],False
Microbe:8,biolink:OrganismTaxon,['Methanosarcina mazei'],[('taxid', '2209'), ('rank', 'strain')],['GTDB'],['https://www.ncbi.nlm.nih.gov/assembly/GCF_000979375.1', 'https://gtdb.ecogenomic.org/genome?gid=GCF_000979375.1', 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2209'],['GTDB:GCF_000979375.1'],False
Microbe:9,biolink:OrganismTaxon,['Methanosarcina mazei WWM610'],[('taxid', '1434117'), ('rank', 'strain')],['GTDB'],['https://gtdb.ecogenomic.org/genome?gid=GCF_000970165.1', 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1434117', 'https://www.ncbi.nlm.nih.gov/assembly/GCF_000970165.1'],['GTDB:GCF_000970165.1'],False
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