ComplicatedWorkflow.json

{
    "workflow": [
        {
            "id": "fill",
            "parameters": { "allowlist": ["infores:cohd"],
                "qedge_keys": [
                    "e0"
                ]
            }
        },
        {
            "id": "overlay_compute_ngd",
            "parameters": {
                "virtual_relation_label": "N1",
                "qnode_keys": [
                    "n0",
                    "n1"
                ]
            }
        },
        {
            "id": "bind"
        },
        {
            "id": "score"
        },
        {
            "id": "filter_results_top_n",
            "parameters": {
                "max_results": 3
            }
        },
        {
            "id": "fill",
            "parameters": { "allowlist": ["infores:rtx-kg2"],
                "qedge_keys": [
                    "e1",
                    "e2",
                    "e3",
                    "e4"
                ]
            }
        },
        {
            "id": "bind"
        },
        {
            "id": "score"
        }
    ],
    "message": {
        "query_graph": {
            "edges": {
                "e0": {
                    "subject": "n0",
                    "object": "n1",
                    "predicates": [
                        "biolink:has_real_world_evidence_of_association_with"
                    ]
                },
                "e1": {
                    "subject": "n1",
                    "object": "n2",
                    "predicates": [
                        "biolink:increases_activity_of"
                    ]
                },
                "e2": {
                    "subject": "n3",
                    "object": "n2",
                    "predicates": [
                        "biolink:increases_activity_of"
                    ]
                },
                "e3": {
                    "subject": "n1",
                    "object": "n2",
                    "predicates": [
                        "biolink:decreases_activity_of"
                    ],
                    "option_group_id": "decr"
                },
                "e4": {
                    "subject": "n3",
                    "object": "n2",
                    "predicates": [
                        "biolink:decreases_activity_of"
                    ],
                    "option_group_id": "decr"
                }
            },
            "nodes": {
                "n0": {
                    "ids": [
                        "MONDO:0009061"
                    ],
                    "is_set": false,
                    "name": "MONDO:0009061"
                },
                "n1": {
                    "is_set": false,
                    "categories": [
                        "biolink:ChemicalEntity"
                    ]
                },
                "n2": {
                    "is_set": false,
                    "categories": [
                        "biolink:Gene",
                        "biolink:Protein"
                    ]
                },
                "n3": {
                    "is_set": false,
                    "categories": [
                        "biolink:ChemicalEntity"
                    ]
                }
            }
        }
    }
}