dkoslicki/small_nodes.tsv

## small_nodes.tsv

          
            node_id
            node_type
            all_names
            description
            knowledge_source
            link
            synonyms
            is_pathogen

            
              Microbe:1
              biolink:OrganismTaxon
              ['Archaea']
              [('rank', 'superkingdom'), ('taxid', '2157')]
              ['GTDB']
              ['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2157']
              ['GTDB:Archaea']
              False

            
              Microbe:2
              biolink:OrganismTaxon
              ['Halobacteriota']
              [('taxid', ''), ('rank', 'phylum')]
              ['GTDB']
              []
              ['GTDB:Halobacteriota']
              False

            
              Microbe:3
              biolink:OrganismTaxon
              ['Methanosarcinia']
              [('taxid', ''), ('rank', 'class')]
              ['GTDB']
              []
              ['GTDB:Methanosarcinia']
              False

            
              Microbe:4
              biolink:OrganismTaxon
              ['Methanosarcinales']
              [('taxid', '94695'), ('rank', 'order')]
              ['GTDB']
              ['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=94695']
              ['GTDB:Methanosarcinales']
              False

            
              Microbe:5
              biolink:OrganismTaxon
              ['Methanosarcinaceae']
              [('taxid', '2206'), ('rank', 'family')]
              ['GTDB']
              ['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2206']
              ['GTDB:Methanosarcinaceae']
              False

            
              Microbe:6
              biolink:OrganismTaxon
              ['Methanosarcina']
              [('taxid', '2207'), ('rank', 'genus')]
              ['GTDB']
              ['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2207']
              ['GTDB:Methanosarcina']
              False

            
              Microbe:7
              biolink:OrganismTaxon
              ['Methanosarcina mazei']
              [('rank', 'species'), ('taxid', '2209')]
              ['GTDB']
              ['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2209']
              ['GTDB:Methanosarcina mazei']
              False

            
              Microbe:8
              biolink:OrganismTaxon
              ['Methanosarcina mazei']
              [('taxid', '2209'), ('rank', 'strain')]
              ['GTDB']
              ['https://www.ncbi.nlm.nih.gov/assembly/GCF_000979375.1', 'https://gtdb.ecogenomic.org/genome?gid=GCF_000979375.1', 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2209']
              ['GTDB:GCF_000979375.1']
              False

            
              Microbe:9
              biolink:OrganismTaxon
              ['Methanosarcina mazei WWM610']
              [('taxid', '1434117'), ('rank', 'strain')]
              ['GTDB']
              ['https://gtdb.ecogenomic.org/genome?gid=GCF_000970165.1', 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1434117', 'https://www.ncbi.nlm.nih.gov/assembly/GCF_000970165.1']
              ['GTDB:GCF_000970165.1']
              False
node_id	node_type	all_names	description	knowledge_source	link	synonyms	is_pathogen
Microbe:1	biolink:OrganismTaxon	['Archaea']	[('rank', 'superkingdom'), ('taxid', '2157')]	['GTDB']	['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2157']	['GTDB:Archaea']	False
Microbe:2	biolink:OrganismTaxon	['Halobacteriota']	[('taxid', ''), ('rank', 'phylum')]	['GTDB']	[]	['GTDB:Halobacteriota']	False
Microbe:3	biolink:OrganismTaxon	['Methanosarcinia']	[('taxid', ''), ('rank', 'class')]	['GTDB']	[]	['GTDB:Methanosarcinia']	False
Microbe:4	biolink:OrganismTaxon	['Methanosarcinales']	[('taxid', '94695'), ('rank', 'order')]	['GTDB']	['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=94695']	['GTDB:Methanosarcinales']	False
Microbe:5	biolink:OrganismTaxon	['Methanosarcinaceae']	[('taxid', '2206'), ('rank', 'family')]	['GTDB']	['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2206']	['GTDB:Methanosarcinaceae']	False
Microbe:6	biolink:OrganismTaxon	['Methanosarcina']	[('taxid', '2207'), ('rank', 'genus')]	['GTDB']	['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2207']	['GTDB:Methanosarcina']	False
Microbe:7	biolink:OrganismTaxon	['Methanosarcina mazei']	[('rank', 'species'), ('taxid', '2209')]	['GTDB']	['https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2209']	['GTDB:Methanosarcina mazei']	False
Microbe:8	biolink:OrganismTaxon	['Methanosarcina mazei']	[('taxid', '2209'), ('rank', 'strain')]	['GTDB']	['https://www.ncbi.nlm.nih.gov/assembly/GCF_000979375.1', 'https://gtdb.ecogenomic.org/genome?gid=GCF_000979375.1', 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2209']	['GTDB:GCF_000979375.1']	False
Microbe:9	biolink:OrganismTaxon	['Methanosarcina mazei WWM610']	[('taxid', '1434117'), ('rank', 'strain')]	['GTDB']	['https://gtdb.ecogenomic.org/genome?gid=GCF_000970165.1', 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1434117', 'https://www.ncbi.nlm.nih.gov/assembly/GCF_000970165.1']	['GTDB:GCF_000970165.1']	False