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Metadata for BETYdb search results annotated in Ecological Metadata Language (EML)
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> | |
<html xmlns:eml="eml://ecoinformatics.org/eml-2.1.1" xmlns:fn="http://www.w3.org/2005/02/xpath-function"> | |
<head> | |
<META http-equiv="Content-Type" content="text/html; charset=UTF-8"> | |
<title>My Test Dataset</title> | |
<link href="./export/export.css" type="text/css" rel="stylesheet"> | |
<script src="./export/export.js" type="text/JavaScript" language="Javascript"></script><script src="{$contextURL}/style/common/branding.js" type="text/JavaScript" language="Javascript"></script> | |
</head> | |
<body> | |
<div id="content"> | |
<table cellpadding="0" cellspacing="0" class="group group_border" width="100%"> | |
<tr> | |
<td> | |
<table class="group group_border onehundred_percent"> | |
<tr> | |
<th> | |
Data Set Citation: | |
</th> | |
</tr> | |
<tr> | |
<td> | |
When using this data, please cite the data package: | |
</td> | |
</tr> | |
<tr> | |
<td class="citation">LeBauer D. <br> | |
<b>My Test Dataset</b> | |
<br> | |
<span class="lsid">dlebauer.3.2</span></td> | |
</tr> | |
</table> | |
<table class="subGroup onehundred_percent"> | |
<tr> | |
<td class="fortyfive_percent"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th colspan="2">General Information:</th> | |
</tr> | |
<tr> | |
<td class="rowodd">Title:</td><td class="roweven"><em class="bold">My Test Dataset</em></td> | |
</tr> | |
<tr> | |
<td class="rowodd">Identifier:</td><td class="roweven">dlebauer.3.2</td> | |
</tr> | |
<tr> | |
<td class="rowodd">Keywords:</td><td class="roweven"> | |
<ul> | |
<li>Plant</li> | |
<li>Nitrogen</li> | |
</ul> | |
</td> | |
</tr> | |
</table> | |
</td><td class="fortyfive_percent"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th colspan="2">Data Table, Image, and Other Data Details:</th> | |
</tr> | |
<tr> | |
<td class="rowodd" width="15%">Metadata download:</td><td class="roweven" width="85%"><a href="/metacat?action=read&qformat=xml&docid="> | |
Ecological Metadata Language (EML) File | |
</a></td> | |
</tr> | |
<tr> | |
<td colspan="2" class="tablehead">Data Table:</td> | |
</tr> | |
<tr> | |
<td> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd"> | |
Name:</td><td class="roweven"><b>Miscanthus Yield</b></td> | |
</tr> | |
<tr> | |
<td colspan="2" class="tablehead"> | |
Physical Structure Description: | |
</td> | |
</tr> | |
<tr> | |
<td colspan="2"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd"> | |
Object Name:</td><td class="roweven">miscanthus_yield.csv</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Text Format:</td><td> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd">Attribute Orientation:</td><td class="roweven">column</td> | |
</tr> | |
<tr> | |
<td class="rowodd">Simple Delimited:</td><td> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd">Field Delimeter:</td><td class="roweven">,</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td colspan="2"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td colspan="2" class="tablehead">Online Distribution Info:</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> </td><td class="roweven"><a href="/metacat?action=read&qformat=export&sessionid=&docid=dlebauer.4.1" target="_blank">ecogrid://knb/dlebauer.4.1</a></td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td colspan="2" class="tablehead">Attribute(s) Info:</td> | |
</tr> | |
<tr> | |
<td colspan="2"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th class="rowodd">Name</th><th>sitename</th><th>city</th><th>lat</th><th>lon</th><th>scientificname</th><th>genus</th><th>author</th><th>citation_year</th><th>treatment</th><th>date</th><th>month</th><th>year</th><th>dateloc</th><th>trait</th><th>mean</th><th>n</th><th>statname</th><th>stat</th> | |
</tr> | |
<tr> | |
<th class="rowodd">Column Label</th><td class="colodd" align="center" colspan="1">Site Name | |
<br> | |
</td><td class="coleven" align="center" colspan="1">City | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Latitude | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Longitude | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Scientific name | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Genus | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Study Author | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Citation year | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Experimental Treatment | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Date | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Month | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Year | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Date Level of Confidence | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Name of trait | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Mean | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Sample Size | |
<br> | |
</td><td class="colodd" align="center" colspan="1">Statistic Name | |
<br> | |
</td><td class="coleven" align="center" colspan="1">Statistic | |
<br> | |
</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Definition</th><td class="colodd" align="center" colspan="1">Name of site, from sites.name field in BETYdb.org</td><td class="coleven" align="center" colspan="1">nearest city</td><td class="colodd" align="center" colspan="1">Latitude in decimal degrees</td><td class="coleven" align="center" colspan="1">Longitude in decimal degrees</td><td class="colodd" align="center" colspan="1">Species latin name. Based on "Scientific Name" field in USDA Plants Database</td><td class="coleven" align="center" colspan="1">Genus</td><td class="colodd" align="center" colspan="1">last name of first author of publication or dataset</td><td class="coleven" align="center" colspan="1">Year of publication or collection</td><td class="colodd" align="center" colspan="1">Name of experimental treatment used in original publication</td><td class="coleven" align="center" colspan="1">Date of observation</td><td class="colodd" align="center" colspan="1">Month</td><td class="coleven" align="center" colspan="1">Year of measurement</td><td class="colodd" align="center" colspan="1">Dateloc Definition | |
9 no data | |
8 year | |
7 season | |
6 month | |
5 day | |
95 unknown year, known day | |
96 unknown year, known month | |
...etc</td><td class="coleven" align="center" colspan="1">Full list available at betydb.org/variables[.csv,.json,.xml],</td><td class="colodd" align="center" colspan="1">Mean value of yield</td><td class="coleven" align="center" colspan="1">Number of replicates</td><td class="colodd" align="center" colspan="1">Name of statistical metric. See https://www.authorea.com/users/5574/articles/6811/_show_article</td><td class="coleven" align="center" colspan="1">Value of statistical summary. See https://www.authorea.com/users/5574/articles/6811/_show_article</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Type of Value</th><td class="colodd" align="center" colspan="1">string | |
<br> | |
</td><td class="coleven" align="center" colspan="1">text | |
<br> | |
</td><td class="colodd" align="center" colspan="1">float | |
<br> | |
</td><td class="coleven" align="center" colspan="1">float | |
<br> | |
</td><td class="colodd" align="center" colspan="1">text | |
<br> | |
</td><td class="coleven" align="center" colspan="1">text | |
<br> | |
</td><td class="colodd" align="center" colspan="1">text | |
<br> | |
</td><td class="coleven" align="center" colspan="1">integer | |
<br> | |
</td><td class="colodd" align="center" colspan="1">text | |
<br> | |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1">integer | |
<br> | |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1">float | |
<br> | |
</td><td class="coleven" align="center" colspan="1">text | |
<br> | |
</td><td class="colodd" align="center" colspan="1">float | |
<br> | |
</td><td class="coleven" align="center" colspan="1">integer | |
<br> | |
</td><td class="colodd" align="center" colspan="1">float | |
<br> | |
</td><td class="coleven" align="center" colspan="1">float | |
<br> | |
</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Measurement Type</th><td class="colodd" align="center" colspan="1">nominal</td><td class="coleven" align="center" colspan="1">nominal</td><td class="colodd" align="center" colspan="1">interval</td><td class="coleven" align="center" colspan="1">ratio</td><td class="colodd" align="center" colspan="1">nominal</td><td class="coleven" align="center" colspan="1">nominal</td><td class="colodd" align="center" colspan="1">nominal</td><td class="coleven" align="center" colspan="1">dateTime</td><td class="colodd" align="center" colspan="1">nominal</td><td class="coleven" align="center" colspan="1">dateTime</td><td class="colodd" align="center" colspan="1">dateTime</td><td class="coleven" align="center" colspan="1">dateTime</td><td class="colodd" align="center" colspan="1">ordinal</td><td class="coleven" align="center" colspan="1">nominal</td><td class="colodd" align="center" colspan="1">ratio</td><td class="coleven" align="center" colspan="1">ratio</td><td class="colodd" align="center" colspan="1">nominal</td><td class="coleven" align="center" colspan="1">interval</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Measurement Domain</th><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Def</b></td><td class="innercolodd">Name of site</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Def</b></td><td class="innercoleven">Name of City</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Unit</b></td><td class="innercolodd">degree</td> | |
</tr> | |
<tr> | |
<td class="innercolodd"><b>Type</b></td><td class="innercolodd">real</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Unit</b></td><td class="innercoleven">degree</td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Type</b></td><td class="innercoleven">real</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Def</b></td><td class="innercolodd">Species Scientific Name</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Def</b></td><td class="innercoleven">Genus</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Def</b></td><td class="innercolodd">surname</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table></table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Def</b></td><td class="innercolodd">Name of Experimental Treatment</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table></table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table></table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table></table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd" align="center" colspan="2"><a href="/metacat?action=read&qformat=export&sessionid=&docid=&displaymodule=attributedomain&entitytype=dataTable&entityindex=1&attributeindex=13"><b>Domain Info</b></a></td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Def</b></td><td class="innercoleven">name</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Unit</b></td><td class="innercolodd">megagramPerHectarePerYear</td> | |
</tr> | |
<tr> | |
<td class="innercolodd"><b>Precision</b></td><td class="innercolodd">0.1</td> | |
</tr> | |
<tr> | |
<td class="innercolodd"><b>Type</b></td><td class="innercolodd">real</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Unit</b></td><td class="innercoleven">dimensionless</td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Type</b></td><td class="innercoleven">natural</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd" align="center" colspan="2"><a href="/metacat?action=read&qformat=export&sessionid=&docid=&displaymodule=attributedomain&entitytype=dataTable&entityindex=1&attributeindex=17"><b>Domain Info</b></a></td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Unit</b></td><td class="innercoleven">metagramPerHectarePerYear</td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Precision</b></td><td class="innercoleven">0.1</td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Type</b></td><td class="innercoleven">real</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Missing Value Code</th><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Code</b></td><td class="innercolodd"></td> | |
</tr> | |
<tr> | |
<td class="innercolodd"><b>Expl</b></td><td class="innercolodd">Not Available</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Code</b></td><td class="innercoleven"></td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Expl</b></td><td class="innercoleven">Not Available</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Code</b></td><td class="innercolodd">[missing]</td> | |
</tr> | |
<tr> | |
<td class="innercolodd"><b>Expl</b></td><td class="innercolodd">not available</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Code</b></td><td class="innercoleven">[missing]</td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Expl</b></td><td class="innercoleven">not available</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercolodd"><b>Code</b></td><td class="innercolodd">[missing]</td> | |
</tr> | |
<tr> | |
<td class="innercolodd"><b>Expl</b></td><td class="innercolodd">not available</td> | |
</tr> | |
</table> | |
</td><td class="coleven" align="center" colspan="1"> | |
<table> | |
<tr> | |
<td class="innercoleven"><b>Code</b></td><td class="innercoleven">[missing]</td> | |
</tr> | |
<tr> | |
<td class="innercoleven"><b>Expl</b></td><td class="innercoleven">not available</td> | |
</tr> | |
</table> | |
</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Accuracy Report</th><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Accuracy Assessment</th><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Coverage</th><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
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</td><td class="colodd" align="center" colspan="1"> | |
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</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td> | |
</tr> | |
<tr> | |
<th class="rowodd">Method</th><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td><td class="colodd" align="center" colspan="1"> | |
| |
</td><td class="coleven" align="center" colspan="1"> | |
| |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
<h3>Involved Parties</h3> | |
<table class="subGroup onehundred_percent"> | |
<tr> | |
<th colspan="2">Data Set Owners:</th> | |
</tr> | |
<tr> | |
<td class="fortyfive_percent"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd"> | |
Individual:</td><td class="roweven"><b> David LeBauer</b></td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Organization:</td><td class="roweven"><b>University of Illinois</b></td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Position:</td><td class="roweven">Research Scientist</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Address:</td><td> | |
<table class="tableparty"> | |
<tr> | |
<td class="roweven">Institute for Genomic Biology, </td> | |
</tr> | |
<tr> | |
<td class="roweven">Urbana, Illinois 61801 United States of America</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Email Address: | |
</td><td> | |
<table class="tableparty"> | |
<tr> | |
<td class="roweven"><a href="mailto:dlebauer@gmail.com">dlebauer@gmail.com</a></td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<th colspan="2">Data Set Contacts:</th> | |
</tr> | |
<tr> | |
<td class="fortyfive_percent"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd"> | |
Individual:</td><td class="roweven"><b> David LeBauer</b></td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Organization:</td><td class="roweven"><b>University of Illinois</b></td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Position:</td><td class="roweven">Research Scientist</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Address:</td><td> | |
<table class="tableparty"> | |
<tr> | |
<td class="roweven">Institute for Genomic Biology, </td> | |
</tr> | |
<tr> | |
<td class="roweven">Urbana, Illinois 61801 United States of America</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Email Address: | |
</td><td> | |
<table class="tableparty"> | |
<tr> | |
<td class="roweven"><a href="mailto:dlebauer@gmail.com">dlebauer@gmail.com</a></td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
<h3>Data Set Characteristics</h3> | |
<table class="subGroup onehundred_percent"> | |
<tr> | |
<td class="fortyfive_percent"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th colspan="2">Geographic Region:</th> | |
</tr> | |
<tr> | |
<td class="rowodd">Geographic Description:</td><td class="roweven">Continental US</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Bounding Coordinates: | |
</td><td> | |
<table> | |
<tr> | |
<td class="rowodd">West: </td><td class="roweven">-127.125 degrees | |
</td> | |
</tr> | |
<tr> | |
<td class="rowodd">East: </td><td class="roweven">-63.0 degrees | |
</td> | |
</tr> | |
<tr> | |
<td class="rowodd">North: </td><td class="roweven">50.625 degrees | |
</td> | |
</tr> | |
<tr> | |
<td class="rowodd">South: </td><td class="roweven">22.5 degrees | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td><td class="fortyfive_percent"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th colspan="2">Time Period:</th> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Begin: | |
</td><td> | |
<table> | |
<tr> | |
<td class="roweven" colspan="2">2000</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
End: | |
</td><td> | |
<table> | |
<tr> | |
<td class="roweven" colspan="2">2015</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td class="onehundred_percent" colspan="2"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th colspan="2">Taxonomic Range:</th> | |
</tr> | |
<tr> | |
<td class="rowodd">Classification:</td><td> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd">Rank Name:</td><td class="roweven">Genus</td> | |
</tr> | |
<tr> | |
<td class="rowodd">Rank Value:</td><td class="roweven">Miscanthus</td> | |
</tr> | |
<tr> | |
<td class="rowodd">Classification:</td><td> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<td class="rowodd">Rank Name:</td><td class="roweven">Species</td> | |
</tr> | |
<tr> | |
<td class="rowodd">Rank Value:</td><td class="roweven">giganteus</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
</table> | |
<h3>Sampling, Processing and Quality Control Methods</h3> | |
<table class="subGroup onehundred_percent"> | |
<tr> | |
<td class="onehundred_percent" colspan="2"></td> | |
</tr> | |
</table> | |
<h3>Data Set Usage Rights</h3> | |
<table class="subGroup onehundred_percent"> | |
<tr> | |
<td> | |
<div class="para">LeBauer, David, Michael Dietze, Rob Kooper, Steven Long, Patrick Mulrooney, Gareth Scott Rohde, Dan Wang (2010). Biofuel Ecophysiological Traits and Yields Database (BETYdb), Energy Biosciences Institute, University of Illinois at Urbana-Champaign. doi:10.13012/J8H41PB9 | |
All public data in BETYdb is made available under the Open Data Commons Attribution License (ODC-By) v1.0. You are free to share, create, and adapt its contents. Data with an access_level field and value <= 2 is is not covered by this license but may be available for use with consent. | |
Copyright © 2010-2014 Energy Biosciences Institute</div> | |
</td> | |
</tr> | |
</table> | |
<table class="subGroup onehundred_percent"> | |
<tr> | |
<td></td> | |
</tr> | |
</table> | |
<tr> | |
<td colspan="2"> | |
<table class="subGroup subGroup_border onehundred_percent"> | |
<tr> | |
<th colspan="3">Access Control:</th> | |
</tr> | |
<tr> | |
<td class="rowodd">Auth System:</td><td colspan="2" class="roweven">knb</td> | |
</tr> | |
<tr> | |
<td class="rowodd">Order:</td><td colspan="2" class="roweven">allowFirst</td> | |
</tr> | |
<tr> | |
<td class="rowodd"> | |
Allow: | |
</td><td class="rowodd">[read] </td><td class="rowodd">public<br> | |
</td> | |
</tr> | |
</table> | |
</td> | |
</tr> | |
<tr> | |
<td colspan="2"> | |
<div class="subGroup subGroup_border onehundred_percent"> | |
<h3>Additional Metadata</h3> | |
<pre>additionalMetadata | |
|___element 'metadata' | |
| |___element 'unitList' | |
| | |___element 'unit' | |
| | | | \___attribute 'id' = 'megagramPerHectarePerYear' | |
| | | | \___attribute 'multiplierToSI' = '315569260' | |
| | | | \___attribute 'name' = 'megagramPerHectarePerYear' | |
| | | | \___attribute 'parentSI' = 'kilogramsPerMeterSquaredPerSecond' | |
| | | | \___attribute 'unitType' = 'arealMassDensityRate' | |
| | | |___element 'description' | |
| | | | |___text 'megagramPerHectarePerYear' | |
| | | |___text '\n' | |
| | |___text '\n' | |
| |___text '\n' | |
|___text '\n' | |
</pre> | |
</div> | |
</td> | |
</tr> | |
</td> | |
</tr> | |
</table> | |
</div> | |
</body> | |
</html> |
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<?xml version="1.0" encoding="UTF-8"?> | |
<eml:eml xmlns:eml="eml://ecoinformatics.org/eml-2.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" packageId="dlebauer.3.2" system="knb" xsi:schemaLocation="eml://ecoinformatics.org/eml-2.1.1 eml.xsd"> | |
<access authSystem="knb" order="allowFirst"> | |
<allow> | |
<principal>public</principal> | |
<permission>read</permission> | |
</allow> | |
</access> | |
<dataset> | |
<title>My Test Dataset</title> | |
<creator id="1433350072573"> | |
<individualName> | |
<givenName>David</givenName> | |
<surName>LeBauer</surName> | |
</individualName> | |
<organizationName>University of Illinois</organizationName> | |
<positionName>Research Scientist</positionName> | |
<address> | |
<deliveryPoint>Institute for Genomic Biology</deliveryPoint> | |
<city>Urbana</city> | |
<administrativeArea>Illinois</administrativeArea> | |
<postalCode>61801</postalCode> | |
<country>United States of America</country> | |
</address> | |
<electronicMailAddress>dlebauer@illinois.edu</electronicMailAddress> | |
</creator> | |
<keywordSet> | |
<keyword>Plant</keyword> | |
<keyword>Nitrogen</keyword> | |
</keywordSet> | |
<intellectualRights> | |
<para>LeBauer, David, Michael Dietze, Rob Kooper, Steven Long, Patrick Mulrooney, Gareth Scott Rohde, Dan Wang (2010). Biofuel Ecophysiological Traits and Yields Database (BETYdb), Energy Biosciences Institute, University of Illinois at Urbana-Champaign. doi:10.13012/J8H41PB9 | |
All public data in BETYdb is made available under the Open Data Commons Attribution License (ODC-By) v1.0. You are free to share, create, and adapt its contents. Data with an access_level field and value <= 2 is is not covered by this license but may be available for use with consent. | |
Copyright © 2010-2014 Energy Biosciences Institute</para> | |
</intellectualRights> | |
<project> | |
<title>Energy Biosciences Institute Feedstock Productivity and Ecosystem Services Modeling Program</title> | |
<personnel> | |
<references>1433350072573</references> | |
<role>Research Scientist</role> | |
</personnel> | |
<funding> | |
<para>Energy Biosciences Institute</para> | |
</funding> | |
</project> | |
<dataTable id="1433353121359"> | |
<entityName>BETYdb Search Results csv output</entityName> | |
<physical> | |
<objectName>search_results.csv</objectName> | |
<dataFormat> | |
<textFormat> | |
<attributeOrientation>column</attributeOrientation> | |
<simpleDelimited> | |
<fieldDelimiter>,</fieldDelimiter> | |
</simpleDelimited> | |
</textFormat> | |
</dataFormat> | |
<distribution> | |
<online> | |
<url>ecogrid://knb/dlebauer.4.1</url> | |
</online> | |
</distribution> | |
</physical> | |
<attributeList> | |
<attribute id="1433353121360"> | |
<attributeName>sitename</attributeName> | |
<attributeLabel>Site Name</attributeLabel> | |
<attributeDefinition>Name of site, from sites.name field in BETYdb.org</attributeDefinition> | |
<storageType>string</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>Name of site</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
<missingValueCode> | |
<codeExplanation>Not Available</codeExplanation> | |
</missingValueCode> | |
</attribute> | |
<attribute id="1433353121361"> | |
<attributeName>city</attributeName> | |
<attributeLabel>City</attributeLabel> | |
<attributeDefinition>nearest city</attributeDefinition> | |
<storageType>text</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>Name of City</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
<missingValueCode> | |
<codeExplanation>Not Available</codeExplanation> | |
</missingValueCode> | |
</attribute> | |
<attribute id="1433353121362"> | |
<attributeName>lat</attributeName> | |
<attributeLabel>Latitude</attributeLabel> | |
<attributeDefinition>Latitude in decimal degrees</attributeDefinition> | |
<storageType>float</storageType> | |
<measurementScale> | |
<interval> | |
<unit> | |
<standardUnit>degree</standardUnit> | |
</unit> | |
<numericDomain> | |
<numberType>real</numberType> | |
</numericDomain> | |
</interval> | |
</measurementScale> | |
<missingValueCode> | |
<code>[missing]</code> | |
<codeExplanation>not available</codeExplanation> | |
</missingValueCode> | |
</attribute> | |
<attribute id="1433353121363"> | |
<attributeName>lon</attributeName> | |
<attributeLabel>Longitude</attributeLabel> | |
<attributeDefinition>Longitude in decimal degrees</attributeDefinition> | |
<storageType>float</storageType> | |
<measurementScale> | |
<ratio> | |
<unit> | |
<standardUnit>degree</standardUnit> | |
</unit> | |
<numericDomain> | |
<numberType>real</numberType> | |
</numericDomain> | |
</ratio> | |
</measurementScale> | |
<missingValueCode> | |
<code>[missing]</code> | |
<codeExplanation>not available</codeExplanation> | |
</missingValueCode> | |
</attribute> | |
<attribute id="1433353121364"> | |
<attributeName>scientificname</attributeName> | |
<attributeLabel>Scientific name</attributeLabel> | |
<attributeDefinition>Species latin name. Based on "Scientific Name" field in USDA Plants Database</attributeDefinition> | |
<storageType>text</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>Species Scientific Name</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121365"> | |
<attributeName>genus</attributeName> | |
<attributeLabel>Genus</attributeLabel> | |
<attributeDefinition>Genus</attributeDefinition> | |
<storageType>text</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>Genus</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121366"> | |
<attributeName>author</attributeName> | |
<attributeLabel>Study Author</attributeLabel> | |
<attributeDefinition>last name of first author of publication or dataset</attributeDefinition> | |
<storageType>text</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>surname</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
<missingValueCode> | |
<code>[missing]</code> | |
<codeExplanation>not available</codeExplanation> | |
</missingValueCode> | |
</attribute> | |
<attribute id="1433353121367"> | |
<attributeName>citation_year</attributeName> | |
<attributeLabel>Citation year</attributeLabel> | |
<attributeDefinition>Year of publication or collection</attributeDefinition> | |
<storageType>integer</storageType> | |
<measurementScale> | |
<dateTime> | |
<formatString>YYYY</formatString> | |
<dateTimePrecision>1 year</dateTimePrecision> | |
</dateTime> | |
</measurementScale> | |
<missingValueCode> | |
<code>[missing]</code> | |
<codeExplanation>not available</codeExplanation> | |
</missingValueCode> | |
</attribute> | |
<attribute id="1433353121368"> | |
<attributeName>treatment</attributeName> | |
<attributeLabel>Experimental Treatment</attributeLabel> | |
<attributeDefinition>Name of experimental treatment used in original publication</attributeDefinition> | |
<storageType>text</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>Name of Experimental Treatment</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121369"> | |
<attributeName>date</attributeName> | |
<attributeLabel>Date</attributeLabel> | |
<attributeDefinition>Date of observation</attributeDefinition> | |
<measurementScale> | |
<dateTime> | |
<formatString>YYYY-MM-DD hh:mm:ss TZ</formatString> | |
</dateTime> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121370"> | |
<attributeName>month</attributeName> | |
<attributeLabel>Month</attributeLabel> | |
<attributeDefinition>Month</attributeDefinition> | |
<storageType>integer</storageType> | |
<measurementScale> | |
<dateTime> | |
<formatString>mm</formatString> | |
</dateTime> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121371"> | |
<attributeName>year</attributeName> | |
<attributeLabel>Year</attributeLabel> | |
<attributeDefinition>Year of measurement</attributeDefinition> | |
<measurementScale> | |
<dateTime> | |
<formatString>YYYY</formatString> | |
</dateTime> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121372"> | |
<attributeName>dateloc</attributeName> | |
<attributeLabel>Date Level of Confidence</attributeLabel> | |
<attributeDefinition>Dateloc Definition | |
9 no data | |
8 year | |
7 season | |
6 month | |
5 day | |
95 unknown year, known day | |
96 unknown year, known month | |
...etc</attributeDefinition> | |
<storageType>float</storageType> | |
<measurementScale> | |
<ordinal> | |
<nonNumericDomain> | |
<enumeratedDomain> | |
<codeDefinition> | |
<code>9</code> | |
<definition>no data</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>8</code> | |
<definition>year</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>7</code> | |
<definition>season</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>6</code> | |
<definition>month</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>5</code> | |
<definition>day</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>95</code> | |
<definition>unknown year, known day</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>96</code> | |
<definition>unknown year, known month</definition> | |
</codeDefinition> | |
</enumeratedDomain> | |
</nonNumericDomain> | |
</ordinal> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121373"> | |
<attributeName>trait</attributeName> | |
<attributeLabel>Name of trait</attributeLabel> | |
<attributeDefinition>Full list available at betydb.org/variables[.csv,.json,.xml],</attributeDefinition> | |
<storageType>text</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<textDomain> | |
<definition>name</definition> | |
</textDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121374"> | |
<attributeName>mean</attributeName> | |
<attributeLabel>Mean</attributeLabel> | |
<attributeDefinition>Mean value of yield</attributeDefinition> | |
<storageType>float</storageType> | |
<measurementScale> | |
<ratio> | |
<unit> | |
<customUnit>megagramPerHectarePerYear</customUnit> | |
</unit> | |
<precision>0.1</precision> | |
<numericDomain> | |
<numberType>real</numberType> | |
</numericDomain> | |
</ratio> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121375"> | |
<attributeName>n</attributeName> | |
<attributeLabel>Sample Size</attributeLabel> | |
<attributeDefinition>Number of replicates</attributeDefinition> | |
<storageType>integer</storageType> | |
<measurementScale> | |
<ratio> | |
<unit> | |
<standardUnit>dimensionless</standardUnit> | |
</unit> | |
<numericDomain> | |
<numberType>natural</numberType> | |
</numericDomain> | |
</ratio> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121376"> | |
<attributeName>statname</attributeName> | |
<attributeLabel>Statistic Name</attributeLabel> | |
<attributeDefinition>Name of statistical metric. See https://www.authorea.com/users/5574/articles/6811/_show_article</attributeDefinition> | |
<storageType>float</storageType> | |
<measurementScale> | |
<nominal> | |
<nonNumericDomain> | |
<enumeratedDomain> | |
<codeDefinition> | |
<code>SE</code> | |
<definition>Standard Error</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>SD</code> | |
<definition>Standard Deviation</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>LSD</code> | |
<definition>Least Significant Difference</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>HSD</code> | |
<definition>Honestly Significant Difference</definition> | |
</codeDefinition> | |
<codeDefinition> | |
<code>MSE</code> | |
<definition>Mean Square Error</definition> | |
</codeDefinition> | |
</enumeratedDomain> | |
</nonNumericDomain> | |
</nominal> | |
</measurementScale> | |
</attribute> | |
<attribute id="1433353121377"> | |
<attributeName>stat</attributeName> | |
<attributeLabel>Statistic</attributeLabel> | |
<attributeDefinition>Value of statistical summary. See https://www.authorea.com/users/5574/articles/6811/_show_article</attributeDefinition> | |
<storageType>float</storageType> | |
<measurementScale> | |
<interval> | |
<unit> | |
<customUnit>metagramPerHectarePerYear</customUnit> | |
</unit> | |
<precision>0.1</precision> | |
<numericDomain> | |
<numberType>real</numberType> | |
</numericDomain> | |
</interval> | |
</measurementScale> | |
</attribute> | |
</attributeList> | |
</dataTable> | |
</dataset> | |
<additionalMetadata> | |
<metadata> | |
<unitList> | |
<unit id="megagramPerHectarePerYear" multiplierToSI="315569260" name="megagramPerHectarePerYear" parentSI="kilogramsPerMeterSquaredPerSecond" unitType="arealMassDensityRate"> | |
<description>megagramPerHectarePerYear</description> | |
</unit> | |
</unitList> | |
</metadata> | |
</additionalMetadata> | |
<additionalMetadata> | |
<metadata> | |
<unitList> | |
<unit id="metagramPerHectarePerYear" multiplierToSI="315569260" name="metagramPerHectarePerYear" parentSI="kilogramsPerMeterSquaredPerSecond" unitType="arealMassDensityRate"> | |
<description>Mg / ha / y</description> | |
</unit> | |
</unitList> | |
</metadata> | |
</additionalMetadata> | |
<additionalMetadata> | |
<metadata> | |
<unitList> | |
<unit id="megagramPerHectarePerYear" multiplierToSI="315569260" name="megagramPerHectarePerYear" parentSI="kilogramsPerMeterSquaredPerSecond" unitType="arealMassDensityRate"> | |
<description>Mg/ha/y</description> | |
</unit> | |
</unitList> | |
</metadata> | |
</additionalMetadata> | |
</eml:eml> |
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