Denis Sermukhamedov dmedov

## most_freq
cat mybook.txt|tr -s '[:space:]' '\n' |tr '[:upper:]' '[:lower:]'|sort|uniq -c|sort -nr|head -10

## sed_change_prefix
sed 's/^\(...\)\(.*\)/echo "\2" >>\1.file/' file | sh

## kClust
# run kClust for all normalized fasta files (90%)
ls |  grep "normalized.fasta$" |  xargs -I {} kClust -i {} -d {}_result -s 4.74

# find all representatives and concatenate it
find -name "rep*" | xargs -I {} cat {} >> all_representatives.fasta

# run kClust for all representatives (~95%)
kClust -i all_representatives.fasta -d all_second_stage -s 4.95

## anti_sec
$ xattr -c file

## paste
paste -d" " filename1 filename2

## grep_recursive
grep -r -n --include "*.java" text_to_find .

## git_clone_last
git clone --depth 1 git://url

## path_finder
pf () { open -a "Path Finder.app" $1; }

## sed_swap
sed -e 's/old_text/new_text/g'

## awk_total
awk '{total = total + $1}END{print total}'
	# run kClust for all normalized fasta files (90%)
	ls \| grep "normalized.fasta$" \| xargs -I {} kClust -i {} -d {}_result -s 4.74

	# find all representatives and concatenate it
	find -name "rep*" \| xargs -I {} cat {} >> all_representatives.fasta

	# run kClust for all representatives (~95%)
	kClust -i all_representatives.fasta -d all_second_stage -s 4.95