dmenne

---
title: "Markdown to Word: Cross-references and captions for tables and figures"
output: 
  bookdown::word_document2
---

```{css, echo=FALSE}
blockquote {
  font-size: 16px;
}

dmenne

---
title: "Markdown to HTML: Cross-references and captions for tables and figure"
output: 
  bookdown::html_document2
---


Update December 2022: `gt` and `rtables` (partially) have cross-references.  
And there is [`quarto`](https://quarto.org/docs/authoring/cross-references.html), not treated here, which has a much more elegant referencing syntax.

dmenne

# See https://discourse.mc-stan.org/t/how-to-translate-a-stan-nonlinear-fit-to-brms/12764/2
suppressPackageStartupMessages(library(brms))
library(breathtestcore)
library(dplyr)
library(ggplot2)

set.seed(4711)
data("usz_13c_d", package = "breathtestcore")
data = usz_13c_d 
data = usz_13c_d[usz_13c_d$patient_id < "sub_18",]

dmenne

# runstan.R
session_dir =  commandArgs(TRUE)[1]
chains  =  commandArgs(TRUE)[2]
# For debug
if (is.na(session_dir)) session_dir = tempdir()
if (is.na(chains)) chains = 2

log_file = file.path(session_dir, "stan.log")
dummy = suppressWarnings(unlink(log_file))
out_file =  paste0(session_dir, "stan.rda")