Install dependencies, creates an environment for Tracking-Termites, clones repository at Desktop and creates a virtualenvnamed 'ttermites'. Tested on Ubuntu 16.04.3 LTS.

tracking-termites.sh

###################################################
##  Install dependencies for Tracking-Termites!  ##
###################################################

# Updates
sudo apt-get update
sudo apt-get upgrade

# Developer tools
sudo apt-get install build-essential cmake pkg-config

# Image I/O libraries
sudo apt-get install libjpeg8-dev libtiff5-dev libjasper-dev libpng12-dev

# Video I/O libraries
sudo apt-get install libavcodec-dev libavformat-dev libswscale-dev libv4l-dev
sudo apt-get install libxvidcore-dev libx264-dev

# GUI tools
sudo apt-get install libgtk-3-dev

# Matrix operation libraries
sudo apt-get install libatlas-base-dev gfortran

# Python development headers
sudo add-apt-repository ppa:deadsnakes/ppa
sudo apt-get install python2.7-dev python3.6-dev

# Download and unzip OpenCV
cd ~
wget -O opencv.zip https://github.com/Itseez/opencv/archive/3.2.0.zip
unzip opencv.zip

# Download and unzip OpenCV-contrib
cd ~
wget -O opencv_contrib.zip https://github.com/Itseez/opencv_contrib/archive/3.2.0.zip
unzip opencv_contrib.zip

# Installing pip
cd ~
wget https://bootstrap.pypa.io/get-pip.py
sudo python get-pip.py

# Installing virtualenvwrapper
sudo pip install virtualenv virtualenvwrapper
sudo rm -rf ~/get-pip.py ~/.cache/pip
export WORKON_HOME=$HOME/.virtualenvs
source /usr/local/bin/virtualenvwrapper.sh
echo -e "\n# virtualenv and virtualenvwrapper" >> ~/.bashrc
echo "export WORKON_HOME=$HOME/.virtualenvs" >> ~/.bashrc
echo "source /usr/local/bin/virtualenvwrapper.sh" >> ~/.bashrc
source ~/.bashrc

# Creating virtual environment
mkvirtualenv ttermites -p python3.6
workon ttermites

# Install numpy
pip install numpy

# Configure build using cmake
cd ~/opencv-3.2.0/
mkdir build
cd build
cmake -D CMAKE_BUILD_TYPE=RELEASE \
    -D CMAKE_INSTALL_PREFIX=/usr/local \
    -D INSTALL_PYTHON_EXAMPLES=ON \
    -D INSTALL_C_EXAMPLES=OFF \
    -D OPENCV_EXTRA_MODULES_PATH=~/opencv_contrib-3.2.0/modules \
    -D PYTHON_EXECUTABLE=~/../../../usr/bin/python  \
    -D BUILD_EXAMPLES=ON ..

# OpenCV compilation
sudo make clean
sudo make

# OpenCV installation
sudo make install
sudo ldconfig

# Fix sym-link
cd /usr/local/lib/python3.6/site-packages/
sudo mv cv2.cpython-35m-x86_64-linux-gnu.so cv2.so
cd ~/.virtualenvs/ttermites/lib/python3.6/site-packages/
ln -s /usr/local/lib/python3.6/site-packages/cv2.so cv2.so

# Cloning the repository
sudo apt-get install git
cd ~/Desktop
git clone https://github.com/dmrib/trackingtermites

# Installing dependency packages
cd ~/Desktop/trackingtermites/
pip install -r requirements.txt

# Cleaning
cd ~
sudo rm -r opencv-3.2.0
sudo rm -r opencv_contrib-3.2.0
sudo rm opencv.zip
sudo rm opencv_contrib.zip