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Created March 28, 2016 17:15
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Repeatedly sample something until the mean (or other statistic) converges to within ε.
import warnings
import numpy as np
from typing import Iterable, Mapping, Callable, Any, Tuple
def converge(sampler: Callable[[None], Iterable[float]],
statistic:Callable[[np.ndarray], float]=np.mean,
ε:float=0.01, min_iters:int=3, max_iters:int=50,
noter:Callable[[int, float, float, Iterable[float]], Any]=lambda i, estimate, delta, samples: print('Iteration {}: {:.3f}, δ=={:.3f}'.format(i, estimate, delta))
) -> Tuple[float, Iterable[float]]:
"""Repeatedly sample something until the mean (or other statistic) converges to within ε.
Example usage:
import numpy as np
x = np.arange(101)
samples, estimate = converge(lambda: np.random.choice(x, 40))
print("{:.5f}".format(estimate))
Example output:
Iteration 1: 54.225, δ==inf
Iteration 2: 52.538, δ==0.031
Iteration 3: 50.883, δ==0.031
Iteration 4: 50.269, δ==0.012
Iteration 5: 51.765, δ==0.030
Iteration 6: 51.880, δ==0.002
51.879
Arguments:
sampler: A function that takes nothing and returns a list of new samples
statistic: A function that returns an estimate from the list of samples (including those from previous iterations);
Should probably be either numpy.mean or numpy.median
ε: The maximal fractional change from the previous estimate at which to halt
min_iters: Perform at least this many iterations
max_iters: Halt after this many iterations and warn with a string starting with "Estimatation exceeded"
noter: Optional function that takes, in order, the iteration index, the current estimate,
the change in the estimate from the previous, and the samples;
This is most notably important if the estimates take a long time to compute and should be written to disk
Returns:
A 2-tuple containing, in order, the estimate and all of the samples
"""
prev_estimate = None
δ = float('+Inf')
collected_samples = []
i = 0
while δ > ε and i <= max_iters or i < min_iters:
samples = sampler()
collected_samples.extend(samples)
current_estimate = statistic(collected_samples)
if prev_estimate is not None:
δ = abs(current_estimate - prev_estimate) / prev_estimate
prev_estimate = current_estimate
i += 1
if noter is not None:
noter(i, current_estimate, δ, samples)
if i >= max_iters:
warnings.warn('Estimatation exceeded max_iters=={} without converging'.format(max_iters))
return collected_samples, statistic(collected_samples)
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