gwangjinkim

This gist I write, because I couldn't find step by step instructions 
how to install and start postgresql locally (using conda within a conda environment - with the result
that you can run it without sudo/admin rights on your machine!)
and not globally in the operating system (which requires sudo/admin rights on that machine).

I hope, this will help especially people new to postgresql (and those who don't have sudo/admin rights on a specific machine but want
to run postgresql there)!

####################################
# create conda environment

tsibley

Recommendations for developing Nextstrain pathogen builds

These are my recommendations for developing modular augur pathogen builds in per-pathogen repositories. They're based on my experience creating such a build using zika as an example while developing the Nextstrain base container and CLI.

Use a config.yaml file

nh2

import numpy as np
import numpy.linalg

# Relevant links:
#   - http://stackoverflow.com/a/32244818/263061 (solution with scale)
#   - "Least-Squares Rigid Motion Using SVD" (no scale but easy proofs and explains how weights could be added)


# Rigidly (+scale) aligns two point clouds with know point-to-point correspondences
# with least-squares error.

mrprompt

-- ExportSQLite: SQLite export plugin for MySQL Workbench
-- Copyright (C) 2009 Thomas Henlich
--
-- This program is free software: you can redistribute it and/or modify
-- it under the terms of the GNU General Public License as published by
-- the Free Software Foundation, either version 3 of the License, or
-- (at your option) any later version.
--
-- This program is distributed in the hope that it will be useful,
-- but WITHOUT ANY WARRANTY; without even the implied warranty of

jwebcat

wget --no-check-certificate --content-disposition https://github.com/joyent/node/tarball/v0.7.1
# --no-check-cerftificate was necessary for me to have wget not puke about https
curl -LJO https://github.com/joyent/node/tarball/v0.7.1