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@dniku
Created July 17, 2018 11:19
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$ pacaur -S gatk
:: Package gatk not found in repositories, trying AUR...
:: resolving dependencies...
:: There are 4 providers available for java-environment:
0) jdk10-openjdk (extra)
1) jdk7-openjdk (extra)
2) jdk8-openjdk (extra)
3) jdk9-openjdk (extra)
Enter a number (default=0): 0
:: looking for inter-conflicts...
AUR Packages (1) gatk-2:4.0.2.1-1
Repo Packages (6) gradle-4.8.1-1 java-environment-common-3-1 jdk10-openjdk-10.0.1.u10-1 jre10-openjdk-10.0.1.u10-1 jre10-openjdk-headless-10.0.1.u10-1 libnet-1.1.6-3
Repo Download Size: 183.40 MiB
Repo Installed Size: 341.92 MiB
:: Proceed with installation? [Y/n]
:: Retrieving package(s)...
:: gatk build files are up-to-date -- skipping
sudo: a password is required
[sudo] password for ser:
:: Checking gatk integrity...
==> Making package: gatk 2:4.0.2.1-1 (Вт 17 июл 2018 14:17:57)
==> Retrieving sources...
-> Found gatk.sh
-> Found gatk-4.0.2.1.tar.gz
==> Validating source files with sha256sums...
gatk.sh ... Passed
gatk-4.0.2.1.tar.gz ... Passed
:: Preparing gatk...
==> Making package: gatk 2:4.0.2.1-1 (Вт 17 июл 2018 14:17:57)
==> WARNING: Skipping dependency checks.
==> Retrieving sources...
-> Found gatk.sh
-> Found gatk-4.0.2.1.tar.gz
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Extracting gatk-4.0.2.1.tar.gz with bsdtar
==> Starting prepare()...
Starting a Gradle Daemon (subsequent builds will be faster)
FAILURE: Build failed with an exception.
* Where:
Build file '/home/ser/.cache/pacaur/gatk/src/gatk-4.0.2.1/build.gradle' line: 141
* What went wrong:
A problem occurred evaluating root project 'gatk'.
> Cannot invoke method getURLs() on null object
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.
BUILD FAILED
Total time: 3.635 secs
==> ERROR: A failure occurred in prepare().
Aborting...
:: failed to verify integrity or prepare gatk package
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