convert_dicom.py

#!/usr/bin/env python
import SimpleITK as sitk
import sys, os
if len ( sys.argv ) < 3:
    print( "Usage: DicomSeriesReader <input_directory> <output_file>" )
    sys.exit ( 1 )
print( "Reading Dicom directory:", sys.argv[1] )
reader = sitk.ImageSeriesReader()
dicom_names = reader.GetGDCMSeriesFileNames( sys.argv[1] )
reader.SetFileNames(dicom_names)
image = reader.Execute()
size = image.GetSize()
print( "Image size:", size[0], size[1], size[2] )
print( "Writing image:", sys.argv[2] )
sitk.WriteImage(image, sys.argv[2])