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August 1, 2023 19:34
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Commands to install sybilSBML R package on MacOS/Linux
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wget https://downloads.sourceforge.net/project/sbml/libsbml/5.17.0/stable/libSBML-5.17.0-core-plus-packages-src.tar.gz | |
tar -xxvf libSBML-5.17.0-core-plus-packages-src.* | |
cd libSBML-5.17.0-Source | |
./configure --prefix=/usr/local/ \ | |
--enable-cpp-namespace \ | |
--enable-fbc \ | |
--enable-shared \ | |
--with-gnu-ld \ | |
--enable-layout \ | |
--enable-comp \ | |
--enable-qual \ | |
--enable-groups \ | |
--enable-compression \ | |
--enable-shared-version | |
make | |
sudo make install | |
cd .. | |
# LINUX Only: sudo ldconfig | |
export DYLD_LIBRARY_PATH=/usr/local/lib | |
wget https://cran.r-project.org/src/contrib/Archive/sybilSBML/sybilSBML_3.0.1.tar.gz | |
R CMD INSTALL sybilSBML_3.0.1.tar.gz |
Thank you so much! I have been struggling to get an install of this working for so long, and this worked!
I've had a go at improving the installation instructions https://github.com/SysBioChalmers/sybil-SBML#installation
Feedback is welcomed!
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Hi everyone!
I am trying to use this with Ubuntu 22 and R
4.1.2
but I keep getting the following error:ERROR: dependency ‘sybil’ is not available for package ‘sybilSBML’
Any ideas what I could do?
Thanks a lot in advance! 🙇