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@dosorio
Last active August 1, 2023 19:34
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Commands to install sybilSBML R package on MacOS/Linux
wget https://downloads.sourceforge.net/project/sbml/libsbml/5.17.0/stable/libSBML-5.17.0-core-plus-packages-src.tar.gz
tar -xxvf libSBML-5.17.0-core-plus-packages-src.*
cd libSBML-5.17.0-Source
./configure --prefix=/usr/local/ \
--enable-cpp-namespace \
--enable-fbc \
--enable-shared \
--with-gnu-ld \
--enable-layout \
--enable-comp \
--enable-qual \
--enable-groups \
--enable-compression \
--enable-shared-version
make
sudo make install
cd ..
# LINUX Only: sudo ldconfig
export DYLD_LIBRARY_PATH=/usr/local/lib
wget https://cran.r-project.org/src/contrib/Archive/sybilSBML/sybilSBML_3.0.1.tar.gz
R CMD INSTALL sybilSBML_3.0.1.tar.gz
@hariszaf
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Hi everyone!
I am trying to use this with Ubuntu 22 and R 4.1.2 but I keep getting the following error:

ERROR: dependency ‘sybil’ is not available for package ‘sybilSBML’

Any ideas what I could do?
Thanks a lot in advance! 🙇

@Braden-Griebel
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Thank you so much! I have been struggling to get an install of this working for so long, and this worked!

@mihai-sysbio
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I've had a go at improving the installation instructions https://github.com/SysBioChalmers/sybil-SBML#installation
Feedback is welcomed!

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