Created
August 14, 2013 15:02
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Example forest plot using ggplot2
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library(ggplot2) | |
dat <- data.frame(group = factor(c("Infliximab","Etanercept","Adalimumab","Golimumab","Certolizumab","Abatacept","Rituximab","Tocilizumab","Total"), | |
levels=c("Total","Certolizumab","Golimumab","Adalimumab","Etanercept","Infliximab","Tocilizumab","Rituximab","Abatacept")), | |
cen = c(1.88,2.67,2.35,2.14,5.08,1.68,2.11,2.01,2.16), | |
low = c(1.01,1.44,1.52,1.59,3.46,1.47,1.64,1.57,1.83), | |
high = c(3.51,4.94,3.65,2.89,7.48,1.90,2.72,2.57,2.55)) | |
p_eff <- ggplot(dat,aes(cen,group)) + | |
geom_point(size=5, shape=18) + | |
geom_errorbarh(aes(xmax = high, xmin = low), height = 0.15) + | |
geom_vline(xintercept = 1, linetype = "longdash") + | |
scale_x_continuous(breaks = seq(0,14,1), labels = seq(0,14,1)) + | |
labs(x="Favours Experimental", y="") + | |
theme(text = element_text(size=20)) + | |
ggtitle("Risk Ratio for ACR20 response at 6 months") | |
p_eff | |
dat2 <- data.frame(group = | |
factor(c("Infliximab","Etanercept","Adalimumab","Golimumab","Certolizumab","Total"), | |
levels=c("Total","Certolizumab","Golimumab","Adalimumab","Etanercept","Infliximab")), | |
cen = c(3.22,0.71,1.59,0.98,2.72,1.26), | |
low = c(1.76,0.54,1.13,0.46,1.23,0.93), | |
high = c(5.91,0.92,2.23,2.08,6.01,1.71)) | |
p_saf <- ggplot(dat2,aes(cen,group)) + | |
geom_point(size=5, shape=18) + | |
geom_errorbarh(aes(xmax = high, xmin = low), height = 0.15) + | |
geom_vline(xintercept = 1, linetype = "longdash") + | |
scale_x_continuous(breaks = seq(0,14,1), labels = seq(0,14,1)) + | |
labs(x="Favours Control", y="") + | |
theme(text = element_text(size=20)) + | |
ggtitle("Risk Ratio for ACR50 response at 6 months for anti TNF-alpha | |
drugs") | |
p_saf |
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