Skip to content

Instantly share code, notes, and snippets.

View dprada's full-sized avatar

Diego Prada-Gracia dprada

View GitHub Profile
@dprada
dprada / BAK_many_ffs.ipynb
Last active June 14, 2020 22:35
Does the forcefield and/or solvent conditions matter just to relax a small peptide model?
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@dprada
dprada / gist:2cc7a422976dd8eefa73a50aca3482f6
Created June 14, 2020 22:32
Does the forcefield and/or solvent conditions matter just to relax a small peptide model?
This file has been truncated, but you can view the full file.
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# How relevant are the forcefield and solvent conditions if just a not-very-stressed structure want to be obtained with a minimization\n",
"\n",
"The original model was minimized with Charmm22. This structure will be the starting point for 6 minizations with two forcefields and three different solvent conditions:\n",
"\n",