Dockerfile

FROM ubuntu:17.10

RUN apt-get update && \
    apt-get install -y gcc g++ && \
    apt-get install -y --no-install-recommends libcurl4-gnutls-dev libcairo2-dev libxt-dev libssl-dev libssh2-1-dev libssl1.0.0 apt-utils && \
    apt-get install -y --no-install-recommends -f libxml2-dev libssl-dev libiodbc2 libiodbc2-dev && \
    apt-get install -y --no-install-recommends unixodbc unixodbc-dev freetds-dev freetds-bin tdsodbc libgeos-dev && \
    rm -rf /var/lib/apt/lists/*

# todo - remove this dual apt-get update
# Install R
RUN apt-get update && \
    apt-get install -y --no-install-recommends software-properties-common && \

    # todo - put this at the start
    add-apt-repository "deb http://cran.ma.imperial.ac.uk/bin/linux/ubuntu zesty/" && \
    apt-get update && \
    apt-get install -y --no-install-recommends --allow-unauthenticated r-base && \
    rm -rf /var/lib/apt/lists/*

# Install Shiny Server dependencies
# RUN apt-get install -y \
#     gdebi-core pandoc pandoc-citeproc libcurl4-gnutls-dev libcairo2 libxt-dev && \
#     rm -rf /var/lib/apt/lists/*

# Install Flamingo dependencies
RUN R -e "install.packages(c('devtools', 'DT', 'shiny', 'shinyBS', 'httr', 'rjson', 'odbc', 'RODBC', 'leaflet', 'ggplot2', 'curl', 'RCurl', 'xml2', 'XML', 'rmarkdown', 'logging'), repos='https://cloud.r-project.org/')" && \
    R -e "install.packages(c('Dataset'), repos='http://R-Forge.R-project.org')" && \
    R -e "install.packages(c('shinyjs'), repos='https://cloud.r-project.org/')" && \
    R -e "remove.packages(c('devtools'))"

error_output

.... SNIP ...

Ign:4 http://cran.ma.imperial.ac.uk/bin/linux/ubuntu zesty/ InRelease

Get:6 http://cran.ma.imperial.ac.uk/bin/linux/ubuntu zesty/ Packages [53.4 kB]

Fetched 57.0 kB in 0s (188 kB/s)

Reading package lists...

W: GPG error: http://cran.ma.imperial.ac.uk/bin/linux/ubuntu zesty/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9

W: The repository 'http://cran.ma.imperial.ac.uk/bin/linux/ubuntu zesty/ InRelease' is not signed.

Reading package lists...

Building dependency tree...

Reading state information...

Some packages could not be installed. This may mean that you have

requested an impossible situation or if you are using the unstable

distribution that some required packages have not yet been created

or been moved out of Incoming.

The following information may help to resolve the situation:



The following packages have unmet dependencies:

 r-base : Depends: r-base-core (>= 3.4.3-1zesty0) but it is not going to be installed

          Depends: r-recommended (= 3.4.3-1zesty0) but it is not going to be installed

E: Unable to correct problems, you have held broken packages.

Removing intermediate container 693560cea091

The command '/bin/sh -c apt-get update &&     apt-get install -y --no-install-recommends software-properties-common &&     add-apt-repository "deb http://cran.ma.imperial.ac.uk/bin/linux/ubuntu zesty/" &&     apt-get update &&     apt-get install -y --no-install-recommends --allow-unauthenticated r-base &&     rm -rf /var/lib/apt/lists/*' returned a non-zero code: 100

script returned exit code 100