View VCF2duck.rs
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use vcf::{VCFReader,VCFRecord}; | |
use std::fs::File; | |
use std::fs::remove_file; | |
use std::io::BufReader; | |
use std::str::from_utf8; | |
use duckdb::{params, Connection}; |
View gist:d2c2358b9929c27cbf7a129c20eaf85e
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vim.opt.number = true | |
vim.opt.mouse = 'a' | |
vim.opt.ignorecase = true | |
vim.opt.hlsearch = false | |
vim.opt.tabstop = 2 | |
vim.opt.shiftwidth = 2 | |
vim.opt.expandtab = true | |
vim.opt.termguicolors = true |
View base.yml
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- regex: ":tr\"(?P<text>.*)\"" | |
replace: "{{translate}}" | |
vars: | |
- name: translate | |
type: shell | |
params: | |
cmd: "python ~/translate.py \"{{text}}\"" |
View graph_pyside6.py
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from PySide6.QtWidgets import * | |
from PySide6.QtCore import * | |
from PySide6.QtGui import * | |
import math | |
import networkx as nx | |
import igraph as ig | |
class Node(QGraphicsItem): |
View owl2thesaurus.py
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from nxontology.imports import from_file | |
import networkx as nx | |
g = from_file("hp.owl") | |
space = 0 | |
previous_first ="" | |
previous_second ="" | |
tab = " " |
View vcf_classifieur.py
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from PySide2.QtWidgets import * | |
import sys | |
class MonWidget(QWidget): | |
def __init__(self, parent=None): | |
super().__init__(parent) | |
hlayout = QHBoxLayout() | |
self.left_button = QPushButton("<") |
View test.wig
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track type=wiggle_0 graphType=points name="truc" description="une description" visibility=full color=50,150,255 yLineMark=11.76 yLineOnOff=on | |
variableStep chrom=chr1 | |
[span=windowSize] | |
2488157 0.4818 | |
2488159 0.4818 | |
2491207 0.537 | |
2494787 0.5251 | |
6257857 0.488 | |
7434547 0.4077 |
View image_coord_motif_detection.py
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import numpy as np | |
import pandas as pd | |
import matplotlib.pyplot as plt | |
from skimage.io import imread | |
from skimage.color import rgb2gray | |
from skimage.filters import threshold_otsu | |
from skimage.measure import label | |
View extract_penis_picture.py
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from qwikidata.sparql import return_sparql_query_results | |
import urllib.request | |
from urllib.parse import urlparse, unquote | |
import os | |
q = """ | |
SELECT ?item ?object ?image | |
WHERE | |
{ |
View snakemake_covid_ngs
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from glob import glob | |
# rule root: | |
# input: | |
# [i.replace("PRJNA673096/","") for i in glob("PRJNA673096/*")] | |
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