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Created January 24, 2014 05:06
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VMD crash log
Info) VMD for MACOSXX86, version 1.9.1 (February 1, 2012)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd@ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 4 CPUs detected.
Warning) Detected a mismatch between CUDA runtime and GPU driver
Warning) Check to make sure that GPU drivers are up to date.
Info) No CUDA accelerator devices available.
Info) OpenGL renderer: NVIDIA GeForce GT 330M OpenGL Engine
Info) Features: STENCIL MDE CVA MTX NPOT PP PS GLSL(OVF)
Info) Full GLSL rendering mode is available.
Info) Textures: 2-D (8192x8192), 3-D (2048x2048x2048), Multitexture (8)
Register
Info) Dynamically loaded 5 plugins in directory:
Info) /Applications/VMD 1.9.1.app/Contents/vmd/plugins/MACOSXX86/molfile
Info) File loading in progress, please wait.
45 TRACE RMF- Begin open_rmf_read
45 INFO RMF- (Re)loading file ../rmf/examples/simple.rmf3
45 INFO RMF- Loading file data
61 INFO RMF- Found static frame
61 INFO RMF- Found frame f0
61 INFO RMF- Found 1 frames
61 TRACE RMF- Found data for 2 nodes.
61 TRACE RMF- Found data for 4 nodes.
61 TRACE RMF- Found data for 2 nodes.
62 INFO RMF- Setting loaded frame to f0
62 INFO RMF- Loading frame f0
62 INFO RMF- Creating new reader
70 TRACE RMF- Looking for frame f0
70 INFO RMF- Found frame for frame fINV
70 INFO RMF- Loaded frame f0 f0
70 TRACE RMF- Found data for 1 nodes.
RMF: found 1 states and 23 atoms.
Found 23 atoms
70 TRACE RMF- End open_rmf_read
Info) Using plugin rmf3 for structure file ../rmf/examples/simple.rmf3
71 TRACE RMF- Begin read_rmf_structure
71 INFO RMF- Reading structure
71 TRACE RMF- End read_rmf_structure
71 TRACE RMF- Begin read_rmf_bonds
71 INFO RMF- Reading bonds
71 TRACE RMF- Found 22 bonds.
71 INFO RMF- Getting bonds (23)
71 TRACE RMF- End read_rmf_bonds
71 TRACE RMF- Begin read_rmf_graphics
71 INFO RMF- Reading graphics
71 TRACE RMF- End read_rmf_graphics
Info) Reading 0 graphics elements...
Info) Using plugin rmf3 for coordinates from file ../rmf/examples/simple.rmf3
71 TRACE RMF- Begin read_rmf_timestep_metadata
72 INFO RMF- Reading timestep data
72 TRACE RMF- End read_rmf_timestep_metadata
72 TRACE RMF- Begin read_rmf_timestep: 23
72 INFO RMF- Reading next frame at f0
Handling body with 0 frames
offset is 0 (0)
72 TRACE RMF- End read_rmf_timestep
72 TRACE RMF- Begin read_rmf_timestep_metadata
72 INFO RMF- Reading timestep data
72 TRACE RMF- End read_rmf_timestep_metadata
72 TRACE RMF- Begin read_rmf_timestep: 23
72 TRACE RMF- End read_rmf_timestep
Info) Finished with coordinate file ../rmf/examples/simple.rmf3.
Info) Analyzing structure ...
Info) Atoms: 23
Info) Bonds: 22
Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
Info) Bondtypes: 2 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
Info) Residues: 3
Info) Waters: 0
Info) Segments: 1
Info) Fragments: 1 Protein: 1 Nucleic: 0
73 TRACE RMF- Begin open_rmf_read
73 INFO RMF- (Re)loading file ../rmf/examples/simple.rmf3
73 INFO RMF- Loading file data
83 INFO RMF- Found static frame
83 INFO RMF- Found frame f0
84 INFO RMF- Found 1 frames
84 TRACE RMF- Found data for 2 nodes.
84 TRACE RMF- Found data for 4 nodes.
84 TRACE RMF- Found data for 2 nodes.
85 INFO RMF- Setting loaded frame to f0
85 INFO RMF- Loading frame f0
85 INFO RMF- Creating new reader
93 TRACE RMF- Looking for frame f0
93 INFO RMF- Found frame for frame fINV
93 INFO RMF- Loaded frame f0 f0
94 TRACE RMF- Found data for 1 nodes.
RMF: found 1 states and 23 atoms.
Found 23 atoms
94 TRACE RMF- End open_rmf_read
94 TRACE RMF- Begin read_rmf_structure
94 INFO RMF- Reading structure
94 TRACE RMF- End read_rmf_structure
94 TRACE RMF- Begin read_rmf_bonds
94 INFO RMF- Reading bonds
94 TRACE RMF- Found 22 bonds.
94 INFO RMF- Getting bonds (23)
94 TRACE RMF- End read_rmf_bonds
/Applications/VMD 1.9.1.app/Contents/MacOS/startup.command: line 7: 73335 Segmentation fault: 11 "$p/../Resources/VMD.app/Contents/MacOS/VMD" $*
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