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January 24, 2014 05:06
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VMD crash log
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Info) VMD for MACOSXX86, version 1.9.1 (February 1, 2012) | |
Info) http://www.ks.uiuc.edu/Research/vmd/ | |
Info) Email questions and bug reports to vmd@ks.uiuc.edu | |
Info) Please include this reference in published work using VMD: | |
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual | |
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38. | |
Info) ------------------------------------------------------------- | |
Info) Multithreading available, 4 CPUs detected. | |
Warning) Detected a mismatch between CUDA runtime and GPU driver | |
Warning) Check to make sure that GPU drivers are up to date. | |
Info) No CUDA accelerator devices available. | |
Info) OpenGL renderer: NVIDIA GeForce GT 330M OpenGL Engine | |
Info) Features: STENCIL MDE CVA MTX NPOT PP PS GLSL(OVF) | |
Info) Full GLSL rendering mode is available. | |
Info) Textures: 2-D (8192x8192), 3-D (2048x2048x2048), Multitexture (8) | |
Register | |
Info) Dynamically loaded 5 plugins in directory: | |
Info) /Applications/VMD 1.9.1.app/Contents/vmd/plugins/MACOSXX86/molfile | |
Info) File loading in progress, please wait. | |
45 TRACE RMF- Begin open_rmf_read | |
45 INFO RMF- (Re)loading file ../rmf/examples/simple.rmf3 | |
45 INFO RMF- Loading file data | |
61 INFO RMF- Found static frame | |
61 INFO RMF- Found frame f0 | |
61 INFO RMF- Found 1 frames | |
61 TRACE RMF- Found data for 2 nodes. | |
61 TRACE RMF- Found data for 4 nodes. | |
61 TRACE RMF- Found data for 2 nodes. | |
62 INFO RMF- Setting loaded frame to f0 | |
62 INFO RMF- Loading frame f0 | |
62 INFO RMF- Creating new reader | |
70 TRACE RMF- Looking for frame f0 | |
70 INFO RMF- Found frame for frame fINV | |
70 INFO RMF- Loaded frame f0 f0 | |
70 TRACE RMF- Found data for 1 nodes. | |
RMF: found 1 states and 23 atoms. | |
Found 23 atoms | |
70 TRACE RMF- End open_rmf_read | |
Info) Using plugin rmf3 for structure file ../rmf/examples/simple.rmf3 | |
71 TRACE RMF- Begin read_rmf_structure | |
71 INFO RMF- Reading structure | |
71 TRACE RMF- End read_rmf_structure | |
71 TRACE RMF- Begin read_rmf_bonds | |
71 INFO RMF- Reading bonds | |
71 TRACE RMF- Found 22 bonds. | |
71 INFO RMF- Getting bonds (23) | |
71 TRACE RMF- End read_rmf_bonds | |
71 TRACE RMF- Begin read_rmf_graphics | |
71 INFO RMF- Reading graphics | |
71 TRACE RMF- End read_rmf_graphics | |
Info) Reading 0 graphics elements... | |
Info) Using plugin rmf3 for coordinates from file ../rmf/examples/simple.rmf3 | |
71 TRACE RMF- Begin read_rmf_timestep_metadata | |
72 INFO RMF- Reading timestep data | |
72 TRACE RMF- End read_rmf_timestep_metadata | |
72 TRACE RMF- Begin read_rmf_timestep: 23 | |
72 INFO RMF- Reading next frame at f0 | |
Handling body with 0 frames | |
offset is 0 (0) | |
72 TRACE RMF- End read_rmf_timestep | |
72 TRACE RMF- Begin read_rmf_timestep_metadata | |
72 INFO RMF- Reading timestep data | |
72 TRACE RMF- End read_rmf_timestep_metadata | |
72 TRACE RMF- Begin read_rmf_timestep: 23 | |
72 TRACE RMF- End read_rmf_timestep | |
Info) Finished with coordinate file ../rmf/examples/simple.rmf3. | |
Info) Analyzing structure ... | |
Info) Atoms: 23 | |
Info) Bonds: 22 | |
Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0 | |
Info) Bondtypes: 2 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0 | |
Info) Residues: 3 | |
Info) Waters: 0 | |
Info) Segments: 1 | |
Info) Fragments: 1 Protein: 1 Nucleic: 0 | |
73 TRACE RMF- Begin open_rmf_read | |
73 INFO RMF- (Re)loading file ../rmf/examples/simple.rmf3 | |
73 INFO RMF- Loading file data | |
83 INFO RMF- Found static frame | |
83 INFO RMF- Found frame f0 | |
84 INFO RMF- Found 1 frames | |
84 TRACE RMF- Found data for 2 nodes. | |
84 TRACE RMF- Found data for 4 nodes. | |
84 TRACE RMF- Found data for 2 nodes. | |
85 INFO RMF- Setting loaded frame to f0 | |
85 INFO RMF- Loading frame f0 | |
85 INFO RMF- Creating new reader | |
93 TRACE RMF- Looking for frame f0 | |
93 INFO RMF- Found frame for frame fINV | |
93 INFO RMF- Loaded frame f0 f0 | |
94 TRACE RMF- Found data for 1 nodes. | |
RMF: found 1 states and 23 atoms. | |
Found 23 atoms | |
94 TRACE RMF- End open_rmf_read | |
94 TRACE RMF- Begin read_rmf_structure | |
94 INFO RMF- Reading structure | |
94 TRACE RMF- End read_rmf_structure | |
94 TRACE RMF- Begin read_rmf_bonds | |
94 INFO RMF- Reading bonds | |
94 TRACE RMF- Found 22 bonds. | |
94 INFO RMF- Getting bonds (23) | |
94 TRACE RMF- End read_rmf_bonds | |
/Applications/VMD 1.9.1.app/Contents/MacOS/startup.command: line 7: 73335 Segmentation fault: 11 "$p/../Resources/VMD.app/Contents/MacOS/VMD" $* |
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