Skip to content

Instantly share code, notes, and snippets.

@dscho
Created August 23, 2010 14:45
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save dscho/545617 to your computer and use it in GitHub Desktop.
Save dscho/545617 to your computer and use it in GitHub Desktop.
diff --git a/Fakefile b/Fakefile
index 0eac65f..ae2854e 100644
--- a/Fakefile
+++ b/Fakefile
@@ -85,6 +85,9 @@ ENVOVERRIDES(JAVA_HOME)=true
FIJI_JAVA_EXT=$FIJI_JAVA_HOME/lib/ext
FIJI_JAVA_EXT(macosx)=$FIJI_JAVA_HOME/Home/lib/ext
JAVA3D_JARS=$FIJI_JAVA_EXT/j3dcore.jar:$FIJI_JAVA_EXT/j3dutils.jar:$FIJI_JAVA_EXT/vecmath.jar
+ENVOVERRIDES(JAVA3D_JARS)=true
+POSTGRESQL_JAR=jars/postgresql-8.2-506.jdbc3.jar
+ENVOVERRIDES(POSTGRESQL_JARS)=true
# tools.jar
TOOLS_JAR=$JAVA_HOME/../lib/tools.jar
@@ -214,7 +217,7 @@ jars/clojure.jar <- clojure/
plugins/loci_tools.jar <- bio-formats/
CLASSPATH(jars/VectorString.jar)=jars/Jama-1.0.2.jar
jars/VectorString.jar <- TrakEM2/
-CLASSPATH(plugins/TrakEM2_.jar)=plugins/VIB_.jar:jars/mpicbg.jar:plugins/loci_tools.jar:plugins/bUnwarpJ_.jar:plugins/level_sets.jar:plugins/Fiji_Plugins.jar:jars/Jama-1.0.2.jar:jars/imglib.jar:plugins/Simple_Neurite_Tracer.jar:plugins/3D_Viewer.jar
+CLASSPATH(plugins/TrakEM2_.jar)=plugins/VIB_.jar:jars/mpicbg.jar:plugins/loci_tools.jar:plugins/bUnwarpJ_.jar:plugins/level_sets.jar:plugins/Fiji_Plugins.jar:jars/Jama-1.0.2.jar:jars/imglib.jar:plugins/Simple_Neurite_Tracer.jar:plugins/3D_Viewer.jar:$POSTGRESQL_JAR
plugins/TrakEM2_.jar <- jars/ij.jar plugins/VIB_.jar jars/mpicbg.jar plugins/bUnwarpJ_.jar plugins/level_sets.jar plugins/Fiji_Plugins.jar jars/imglib.jar jars/VectorString.jar TrakEM2/
plugins/ij-ImageIO_.jar <- ij-plugins/
jars/jacl.jar <- tcljava/
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment